Gene Information

Name : gspC (CE10_3495)
Accession : YP_006145503.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : general secretion pathway protein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3560571 - 3561530 bp
Length : 960 bp
Strand : -
Note : -

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAGTTGCTGACAAAAATTCGTCACACTCTTAGCCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATGGTGCGCGGGATGTTCTGGCTCATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCCTCATCGGCGAATAAACCG
CTCCGTGCGGATGCAAAACCGTTCGATAAAAATGACGTGCAATTAGTCAGCCAACAAAACTGGTTTGGCAAATATCAACC
CGTCGCCGCACCGGTAAAACAACCCGAACCTGCGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGCGGGATCGCCT
TTGGTGCCAGACCCGGCGCGGTGATTGAAGAAGGCGGCAAACAGCAGGTCTATTTACAGGGCGAACGGCTTGGCTCTCAC
AACGCGGTGATTGAGGAAATTAATCGTGACCATGTGATGCTGCGCTATCAGGGGAAAATGGAACGTCTGAGTCTGGCAGA
AGAGAAGCGTCCCACCAAAGCCGTGACCAGCAAAAAAGCCGTCAGCGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG
CCAGTGCGCCAGTTGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAAGGGATTGTCGGTTATGCAGTGAAACCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTTAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MARVVFRDARIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSANKP
LRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPEPAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKMERLSLAEEKRPTKAVTSKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-112 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspC YP_006145503.1 general secretion pathway protein C VFG2046 Protein 9e-109 93