Gene Information

Name : yghD (CE10_3485)
Accession : YP_006145493.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : putative secretion pathway M-type protein, membrane anchored
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3551069 - 3551605 bp
Length : 537 bp
Strand : -
Note : -

DNA sequence : 
ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGACACA
ACACCTGGCGGGGCGTTCTCCGCGTGAAAAAGGCATGTTACTGGCAGCGGTAGTGTTCCTGTTTAGCGCCGGATATTACG
TTCTCATCTGGCAGCCGTTGAGCGAACGGATTGAGCAACAGGAGACAATGTTGCAGCAGCTGGTGGCGATGAACACCCGA
CTGAAGAGCGCCGCGCCGGATATTATTGCGGCGCGAAAATCCGGCACGACAACGCCAGCACAGGTATCGCGGGTCATCAG
CGACAGTGCTTCGGCGCATTCAGTGGTCATTAAGCGAATAGCCGAGCGCGGGGAGAATATCCAGGTCTGGATAGATCCTG
TGGTATTTAATGATCTGCTGAACTGGTTAAACGCGCTGGATGAAAAATATGCGCTGCGGGTGACACAAATTGATGTCAGT
GCTGCTGAGAAGCCTGGGATGGTGAATGTGCAGCGGCTGGAGTTTGGACGGGGGTAG

Protein sequence : 
MLRDKFIHYFQQWRERQLSRGEHWLTQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETMLQQLVAMNTR
LKSAAPDIIAARKSGTTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDVS
AAEKPGMVNVQRLEFGRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspM CAE85225.1 GspM, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-79 99
gspM YP_854398.1 general secretion pathway protein YghD Not tested PAI I APEC-O1 Protein 4e-78 97
yghD CAI43907.1 putative secretion pathway protein Not tested LEE Protein 1e-78 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghD YP_006145493.1 putative secretion pathway M-type protein, membrane anchored VFG2056 Protein 8e-58 95