Gene Information

Name : papA1 (CE10_3429)
Accession : YP_006145442.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : major pilin subunit PapA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3496669 - 3497259 bp
Length : 591 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAAGAGGTTGTTATTTATGATTAAGTCGGTTATTGCCGGTGCGGTAGCTATGGCAGTGGTGTCTTTTGGTGTAAA
TGCTGCTCTAACTACTCCACAGGGGCAGGGTAGAGTAACCTTTAACGGAACTGTTGTTGATGCTCCATGCAGCATTTCTC
AGAAATCAGCTGATCAGTCTATTGATTTTGGACAGCTTTCAAAAAGCTTCCTTCAAGCAGGAGGCGTATCCAAACCAATG
AATTTAGATATTGAATTGGTTAATTGTGATATCACTTCATTTAAGGGGGGGGGAGGAGTCTCGGCAGCAAAAAAAGGGAC
TGTGAAGCTGGCTTTTAGTGGTCCAAGGGTTTCTGGTCATAATGAGGAGTTAGATACCAGCGGGGGGACAGGTACTGCGA
TTGTAGTTCAGGCTGCAGGTAAAAACGTTTCTTTCGATGGCACAGAAGGTGATGCTAATACCCTGAAAGATGGTGATAAT
GTGCTGCATTATACTGCGATTGTTAAGAAGTCGTCAGCCAATAATGCCCAAGTCACTGAGGGTGCTTTTTCTGCAGTCGC
AACCGGTGATGCTGCCAACTTACTGATTTAG

Protein sequence : 
MKKRLLFMIKSVIAGAVAMAVVSFGVNAALTTPQGQGRVTFNGTVVDAPCSISQKSADQSIDFGQLSKSFLQAGGVSKPM
NLDIELVNCDITSFKGGGGVSAAKKGTVKLAFSGPRVSGHNEELDTSGGTGTAIVVQAAGKNVSFDGTEGDANTLKDGDN
VLHYTAIVKKSSANNAQVTEGAFSAVATGDAANLLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 2e-62 82
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 3e-62 82
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 5e-45 63
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 1e-44 63
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 6e-44 63
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 1e-35 58
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 3e-37 58
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 5e-31 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papA1 YP_006145442.1 major pilin subunit PapA VFG0893 Protein 3e-45 63
papA1 YP_006145442.1 major pilin subunit PapA VFG0882 Protein 2e-44 63
papA1 YP_006145442.1 major pilin subunit PapA VFG1550 Protein 1e-37 58