Gene Information

Name : fliP (CE10_2229)
Accession : YP_006144296.1
Strain : Escherichia coli CE10
Genome accession: NC_017646
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2237804 - 2238541 bp
Length : 738 bp
Strand : +
Note : -

DNA sequence :

ATGCGTCGTTTGTTTTCTGTCGCACCGGTCCTTCTCTGGCTGATTACGCCCCTCGCCTTCGCGCAACTGCCGGGTATCAC
CAGCCAGCCGCTACCTGGCGGTGGACAAAGCTGGTCGCTCCCGGTGCAGACGCTGGTGTTCATCACCTCGTTGACGTTCA
TTCCAGCGATTTTACTGATGATGACCAGTTTCACCCGCATCATTATTGTTTTTGGTTTATTGCGTAACGCGCTGGGAACG
CCCTCCGCGCCACCTAACCAGGTATTGCTGGGGCTGGCACTGTTTTTGACCTTTTTTATTATGTCGCCAGTGATCGACAA
AATTTATGTCGATGCGTACCAGCCATTCAGCGAAGAGAAAATCTCAATGCAGGAGGCGCTGGAAAAAGGGGCGCAGCCGC
TGCGTGAGTTTATGCTGCGTCAGACCCGCGAGGCAGATTTAGGGTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAG
GGGCCTGAAGCTGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTT
CACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATTGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCC
CTGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGGCG
CAGAGCTTTTACAGCTAG

Protein sequence :

MRRLFSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT
PSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQ
GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
QSFYS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	2e-29	44
escR	AFO66317.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	7e-29	43
escR	AFO66400.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	7e-29	43
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	1e-25	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	1e-25	42
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	1e-25	42
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	3e-30	42
escR	AAC31528.1	L0049	Virulence	LEE	Protein	3e-30	42
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	4e-30	42
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	3e-30	42
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	4e-30	42
escR	AAC38369.1	EscR	Virulence	LEE	Protein	2e-29	42
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	4e-30	42
escR	AAK26700.1	EscR	Virulence	LEE	Protein	3e-30	42
escR	AAL57527.1	EscR	Virulence	LEE	Protein	3e-30	42
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	3e-30	42
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	3e-30	42
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	4e-30	42
hrcR	AAT96146.1	HrcR	Virulence	T-PAI	Protein	3e-22	41
hrcR	AAT96200.1	HrcR	Virulence	T-PAI	Protein	3e-22	41
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	1e-29	41
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	2e-29	41
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	2e-29	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG2338	Protein	1e-91	85
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG2494	Protein	1e-75	68
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG1259	Protein	9e-65	61
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG2016	Protein	2e-60	56
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG0188	Protein	1e-33	42
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG0394	Protein	4e-31	42
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG0715	Protein	1e-29	42
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG0827	Protein	2e-30	42
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG0519	Protein	7e-30	41
fliP	YP_006144296.1	flagellar biosynthesis protein	VFG0044	Protein	3e-33	41