Gene Information

Name : papF (ECNA114_4666)
Accession : YP_006141789.1
Strain : Escherichia coli NA114
Genome accession: NC_017644
Putative virulence/resistance : Virulence
Product : P pilus minor tip component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4816764 - 4817264 bp
Length : 501 bp
Strand : +
Note : -

DNA sequence : 
ATGATTCGCTTATCATTATTTATATCGTTGCTTCTGACATCGGTCGCTGTACTGGCTGATGTGCAGATTAACATCAGGGG
AAATGTTTATATCCCCCCATGCACCATTAATAACGGGCAGAATATTGTTGTTGATTTTGGGAATATTAATCCTGAGCACG
TGGACAACTCACGTGGTGAAGTCACAAAAACCATAAGCATATCCTGTACGTATAAGAGTGGCTCACCCTGGATAAAGGTC
ACAGGTAATGCAATGGCTGGGCAGACTAATGTACTGGCAACAAATATAACTCATTTTGGTATAGCGCTGTATCAGGGAAA
AGGAATGTCAACACCTCTTACATTAGGTAATGGTTCAGGAAATGGTTACAGAGTGACAGCAGGTCTGGACACAGCACGTT
CAACGTTCACCTTTACTTCAGTGCCCTTTCGTAATGGCAGCAGGACACTGAATGGCGGGGATTTCCGGACCACGGCCAGT
ATGAGCATGATTTATAACTGA

Protein sequence : 
MIRLSLFISLLLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNINPEHVDNSRGEVTKTISISCTYKSGSPWIKV
TGNAMAGQTNVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSRTLNGGDFRTTAS
MSMIYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papF NP_755459.1 PapF protein Virulence PAI I CFT073 Protein 8e-72 99
papF_2 NP_757028.1 PapF protein Virulence PAI II CFT073 Protein 8e-72 99
papF YP_854249.1 P pilus minor tip component PapF Virulence PAI I APEC-O1 Protein 3e-72 99
papF AAZ04419.1 P pilus minor tip component Virulence PAI I APEC-O1 Protein 2e-72 99
papF YP_002414010.1 Fimbrial adapter PapF Not tested Not named Protein 1e-71 98
prfF CAD42024.1 PrfF protein Virulence PAI II 536 Protein 1e-68 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papF YP_006141789.1 P pilus minor tip component VFG0900 Protein 2e-72 99
papF YP_006141789.1 P pilus minor tip component VFG0889 Protein 2e-72 99
papF YP_006141789.1 P pilus minor tip component VFG1543 Protein 6e-69 96