Gene Information

Name : kspT (ECNA114_3034)
Accession : YP_006140147.1
Strain : Escherichia coli NA114
Genome accession: NC_017644
Putative virulence/resistance : Virulence
Product : Capsular polysaccharide ABC transporter,ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3111210 - 3111905 bp
Length : 696 bp
Strand : -
Note : -

DNA sequence : 
ATGATTAAGATTGAGAATTTGACGAAGTCATATCGTACGCCAACGGGGCGACACTATGTGTTTAAGGATTTAAACATCGA
AATCCCTTCAGGAAAAAGCGTTGCCTTTATTGGTCGTAATGGTGCGGGTAAATCAACGTTACTGAGAATGATTGGTGGCA
TTGACCGCCCCGATAGCGGAAAGATCATCACCAATAAAACGATATCATGGCCAGTCGGCCTCGCCGGTGGATTCCAGGGA
AGTTTAACCGGACGCGAAAACGTAAAATTTGTTGCGCGGTTATACGCGAAGCAAGAAGAGCTGAAAGAGAAAATTGAGTT
TGTCGAAGAATTTGCCGAACTCGGTAAGTACTTTGATATGCCGATCAAAACTTACTCCTCAGGTATGCGATCGCGTTTAG
GCTTTGGTTTAAGCATGGCATTTAAGTTTGATTATTATATCGTCGATGAAGTAACAGCTGTCGGTGATGCCAGGTTTAAA
GAGAAGTGCGCTCAATTGTTTAAAGAAAGGCATAAAGAGTCTAGCTTTTTGATGGTTTCACATAGTTTGAATTCATTGAA
AGAGTTTTGTGATGTGGCGATTGTTTTTAAAAATAGCTATATTATTGGTTATTATGAGAATGTTCAAAGTGGTATAGATG
AGTATAAAATAAATGTATATTATGTGCTATATCCAAAGATATCTAATATATATTAG

Protein sequence : 
MIKIENLTKSYRTPTGRHYVFKDLNIEIPSGKSVAFIGRNGAGKSTLLRMIGGIDRPDSGKIITNKTISWPVGLAGGFQG
SLTGRENVKFVARLYAKQEELKEKIEFVEEFAELGKYFDMPIKTYSSGMRSRLGFGLSMAFKFDYYIVDEVTAVGDARFK
EKCAQLFKERHKESSFLMVSHSLNSLKEFCDVAIVFKNSYIIGYYENVQSGIDEYKINVYYVLYPKISNIY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 4e-72 73
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-67 72
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 3e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kspT YP_006140147.1 Capsular polysaccharide ABC transporter,ATP-binding protein VFG1449 Protein 4e-68 72
kspT YP_006140147.1 Capsular polysaccharide ABC transporter,ATP-binding protein VFG0696 Protein 5e-44 46
kspT YP_006140147.1 Capsular polysaccharide ABC transporter,ATP-binding protein VFG0258 Protein 1e-41 43
kspT YP_006140147.1 Capsular polysaccharide ABC transporter,ATP-binding protein VFG2563 Protein 9e-39 42