Gene Information

Name : ECNA114_2439 (ECNA114_2439)
Accession : YP_006139547.1
Strain : Escherichia coli NA114
Genome accession: NC_017644
Putative virulence/resistance : Unknown
Product : putative phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2475154 - 2476329 bp
Length : 1176 bp
Strand : +
Note : -

DNA sequence :
ATGCTGCTATCTGACATCCAAATAAAAAGAGCAAAACCGAAGGACAAACCCTATACGCTTAACGATGGTATGGGGCTATC
ACTCCTGATCGACACAGCGGGCAGTAAAGGCTGGCGTTTTCGCTATCGCTTTGCAGGTAAGCCTAAGATGATTTCCTTTG
GCGTATATGGCGATGTGTCGTTGGCACAGGCACGTACCAAACGTGATGAAGCGCGTTCGATGTTAGCCAACGGGATAAAC
CCAAGTGAAGCCAGAAAAGCAGATAAGATTGCTTTGCAGTTCGCGCATGAGAACAGCTTTGAGTCTGTGGCCAGAGAATG
GCACTCATCGAAAAAAGCCACCTGGTCAGAGGGTTATGCAAAAGAGGTTCTCAATTGTATGGAAAAGGATATTTTTCCTT
TTATCGGCCAGCGCCCAATTGAGCAGATTGAACCATTAGAACTGCTAACCGTCCTGCAAAAAATAGAGAAAAGAGGTGCG
CTAGAGCAAACCAGTAAGATCCGCCGCCGCTGTGGTGAAGTGCTTCGTTATGCTGTTGCCACTGGTAGAGCAAAGTATAA
TTTTGCACCCGATTTAGCTATCGCACTCAACAAACCTAAAACCCAACACTTCCCGTTCCTGACTGAAAGCGAGTTGCCCG
AGTTCGTTAATGCTCTGGATAACTATCAGGGCAGTTTAGTTACCAAATACGCCACGCAGCTGTTGATGCTAACAGGCGTG
CGAACAATTGAACTACGTGCAGCGGAATGGGCTGAGTTTGATTTAGATAATGCCTTATGGGAGATCCCCAAAGAACGGAT
GAAGAAACGCCGCCCCCATCTGGTTCCGTTATCAACTCAGGCGATCAATATCCTGAAAAAGCTGCAAGAAATAACAGGGA
ATTACAGCCTCGTTTTCCCTGGCCGGAATGACGTCAGTAAACCAATGAGCGAAGCCAGCATCAACAAAGTGATAAAACTA
CTGGGTTATCACGGTCGGTTAACGGGTCACGGTTTCAGGCATACCATGAGCACCATCTTGCATGAGCATGGGTTTGAAAG
TGCCTGGATTGAAATGCAGCTTGCGCATGTTGATAAGAACTCTATTCGAGGTACTTACAATCATGCGCAATATATTAAAG
ATCGACAAGTAATGATGGAATGGTACGCTAGCTTATTAAATACGACCTGCTATTAA

Protein sequence :
MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRFRYRFAGKPKMISFGVYGDVSLAQARTKRDEARSMLANGIN
PSEARKADKIALQFAHENSFESVAREWHSSKKATWSEGYAKEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGA
LEQTSKIRRRCGEVLRYAVATGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV
RTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAINILKKLQEITGNYSLVFPGRNDVSKPMSEASINKVIKL
LGYHGRLTGHGFRHTMSTILHEHGFESAWIEMQLAHVDKNSIRGTYNHAQYIKDRQVMMEWYASLLNTTCY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 2e-124 64
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-125 64
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 8e-125 63
ECs4534 NP_312561.1 integrase Not tested LEE Protein 8e-125 63
int AAC31482.1 CP4-like integrase Not tested LEE Protein 6e-125 63
int ACU09430.1 integrase Not tested LEE Protein 6e-125 63
int AAD44730.1 Int Not tested SHI-2 Protein 2e-122 63
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-122 63
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-122 63
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-122 63
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-117 62
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 5e-117 57
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-76 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-77 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-77 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-77 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-74 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-76 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-76 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-76 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-76 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-76 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-77 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 6e-73 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 6e-73 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-76 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-76 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-75 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-76 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-75 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-76 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-76 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-76 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECNA114_2439 YP_006139547.1 putative phage integrase VFG0783 Protein 3e-125 63
ECNA114_2439 YP_006139547.1 putative phage integrase VFG0598 Protein 9e-123 63
ECNA114_2439 YP_006139547.1 putative phage integrase VFG0626 Protein 7e-77 41
ECNA114_2439 YP_006139547.1 putative phage integrase VFG1693 Protein 5e-77 41