Gene Information

Name : rci (UMNK88_pIncI174)
Accession : YP_006137020.1
Strain :
Genome accession: NC_017642
Putative virulence/resistance : Unknown
Product : IncI1 shufflon-specific DNA recombinase Rci
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 73508 - 74662 bp
Length : 1155 bp
Strand : -
Note : -

DNA sequence : 
ATGCCGTCTCCACGCATCCGTAAAATGTCCCTGTCACGCGCACTGGATAAGTACCTGAAAACAGTTTCTGTTCACAAGAA
AGGGCATCAACAGGAGTTTTACCGGAGCAATGTTATCAAGCGATATCCCATTGCCCTTCGGAATATGGACGAAATAACAA
CCGTTGATATTGCTACATACAGAGACGTTCGTTTAGCAGAAATCAACCCCCGAACGGGTAAAGCTATTACAGGTAATACT
GTACGTCTTGAACTCGCCCTTCTGTCATCTCTGTTCAATATTGCTCGTGTTGAATGGGGAACCTGTCGTACTAACCCGGT
TGAACTGGTTCGCAAGCCGAAAGTATCCTCCGGACGAGATCGCCGGCTAACGTCTTCAGAAGAACGTCGCCTTTCTCGCT
ATTTCCGCGAAAAAAATCTGATGTTGTATGTCATTTTCCATCTTGCCCTTGAAACAGCCATGCGGCAGGGCGAAATACTG
GCCTTACGTTGGGAGCACATTGATTTGCGCCATGGTGTGGCTCATTTACCTGAAACCAAAAACGGTCACTCACGGGATGT
TCCTCTGTCCAGACGTGCCCGTAACTTTCTTCAGATGATGCCCGTTAATCTCCACGGCAATGTTTTTGATTACACCGCAT
CCGGCTTTAAAAATGCCTGGAGAATAGCCACACAACGACTTCGCATCGAGGACCTGCATTTTCACGATCTACGGCATGAA
GCAATAAGCCGCTTCTTCGAACTGGGTAGCCTGAATGTAATGGAGATTGCTGCAATATCAGGACATCGTTCCATGAATAT
GCTGAAACGGTATACTCATCTTCGTGCATGGCAACTGGTCAGTAAGCTTGATGCCCGCCGGCGGCAGACACAAAAAGTGG
CAGCATGGTTTGTGCCGTATCCTGCCCATATCACGACCATCGATGAAGAAAATGGGCAGAAAGCGCATCGTATTGAGATC
GGTGATTTTGATAACCTTCACGTCACTGCCACAACGAAAGAGGAAGCAGTTCACCGCGCCAGTGAGGTTTTGTTGCGTAC
ACTGGCCATTGCAGCACAGAAAGGCGAACGTGTCCCATCTCCCGGAGCGTTACCTGTTAACGACCCTGACTACATTATGA
TTTGCCCTCTGAACCCGGGCAGCACCCCGCTGTAA

Protein sequence : 
MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRDVRLAEINPRTGKAITGNT
VRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEIL
ALRWEHIDLRHGVAHLPETKNGHSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLRHE
AISRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRAWQLVSKLDARRRQTQKVAAWFVPYPAHITTIDEENGQKAHRIEI
GDFDNLHVTATTKEEAVHRASEVLLRTLAIAAQKGERVPSPGALPVNDPDYIMICPLNPGSTPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rci NP_458640.1 shufflon-specific DNA recombinase Not tested SPI-7 Protein 5e-123 72
rci NP_807850.1 shufflon-specific DNA recombinase Not tested SPI-7 Protein 5e-123 72
rci AAC38070.2 Rci Not tested SPI-7 Protein 4e-123 72