Gene Information

Name : irlR (UMNK88_599)
Accession : YP_006132408.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Virulence
Product : transcriptional activator protein IrlR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 619937 - 620620 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGTTGATTGTCGAAGATGAAAAGAAAACCGGAGAATACTTGACCAAAGGGTTAACCGAAGCCGGTTTTGTGGT
CGATTTGGCCGACAACGGGCTGAATGGCTACCATCTGGCGATGACCGGTGATTATGATCTGATAATCCTCGATATTATGC
TGCCGGACGTGAACGGCTGGGATATCGTGCGCATGTTACGCTCCGCCAATAAAGGGATGCCGATTCTGTTGCTTACCGCG
CTTGGCACCATTGAACATCGCGTCAAGGGGCTGGAGTTGGGGGCAGATGACTACCTGGTGAAGCCATTCGCTTTTGCTGA
ACTGCTGGCGCGGGTGCGCACATTACTGCGGCGCGGGGCGGCGGTGATTATCGAAAGTCAGTTTCAGGTTGCCGATTTGA
TGGTCGATCTCGTCAGCCGCAAAGTCACCCGCAGCGGCACGCGCATCACTTTGACCAGTAAAGAGTTTACTCTGCTGGAG
TTCTTCCTTCGCCATCAGGGCGAAGTGCTGCCCCGCTCGCTTATCGCCTCGCAGGTATGGGACATGAATTTTGACAGCGA
TACCAATGCTATTGATGTGGCGGTGAAGCGGCTGCGCGGCAAAATCGACAACGACTTTGAGCCGAAGCTAATTCAGACCG
TGCGCGGCGTGGGTTACATGCTTGAGGTGCCGGATGGTCAGTAA

Protein sequence : 
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE
FFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-56 53
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-56 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0111 Protein 6e-104 100
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0347 Protein 2e-87 83
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0083 Protein 1e-70 62
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0638 Protein 2e-63 62
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0308 Protein 1e-63 60
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0197 Protein 9e-64 59
irlR YP_006132408.1 transcriptional activator protein IrlR BAC0125 Protein 7e-64 56
irlR YP_006132408.1 transcriptional activator protein IrlR AE000516.2.gene3505. Protein 2e-27 42
irlR YP_006132408.1 transcriptional activator protein IrlR NC_010079.5776364.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_002952.2859858.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_007622.3794948.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_003923.1003417.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_013450.8614146.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_002951.3238224.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_007793.3914065.p0 Protein 2e-34 41
irlR YP_006132408.1 transcriptional activator protein IrlR NC_002758.1121390.p0 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR YP_006132408.1 transcriptional activator protein IrlR VFG0596 Protein 1e-56 53
irlR YP_006132408.1 transcriptional activator protein IrlR VFG1390 Protein 3e-43 43
irlR YP_006132408.1 transcriptional activator protein IrlR VFG1389 Protein 6e-34 41