Gene Information

Name : UMNK88_5237 (UMNK88_5237)
Accession : YP_006136866.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5109954 - 5111192 bp
Length : 1239 bp
Strand : -
Note : putative transposase

DNA sequence :
ATGAACTTCGGCAGTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGA
GAGCGATACGCTGACTGGTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCC
CTGAATCACTACCCCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTAT
CTGGGCGAGGATACCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGC
CTGTACTCAGTGCGATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGC
TGGCCCGCGTGCTGACCTCGAAGTATGCAGAGCACACCCCGCTGTATTGCCAGTCAGAAATATACAGCCGGCAAGGTGTG
GAGCTGAGCCGTTCACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGG
CTATGTCATGACTGACGGCAAACTCCATGCCGATGATARCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGA
CCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCCGGGTCAGCGTTGGCACCTGCAGTGAGGTTCGCTTACAGC
CCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCTTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTT
CAACGAGCTGTATCGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACG
TCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGA
ATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGCTGTTGAAATCCCTGGAAAGCTGGTTGCGTGA
AAAGATGAAGACCCTGTTCTTCGGCTCTGGCCATGGTGGTGAGCGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCA
AACTGAATGACGTGGATCCAGAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGGTCAGC
GAACTGCTTCCGTGGCGCATAGCACTGCCAGCTGAATAA

Protein sequence :
MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSY
LGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYSRQGV
ELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDXPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYS
PDRKGIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRG
MPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVS
ELLPWRIALPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 99
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 2e-137 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 4e-161 99
tnp AEA34686.1 transposase Not tested Not named Protein 1e-160 96
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 1e-161 96
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-161 96
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-161 95
unnamed AAL57570.1 unknown Not tested LEE Protein 9e-162 95
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-120 74
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-106 63
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 4e-88 61
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 9e-95 58
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-91 54
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 6e-91 54
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 6e-92 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_5237 YP_006136866.1 hypothetical protein VFG1051 Protein 0.0 99
UMNK88_5237 YP_006136866.1 hypothetical protein VFG1516 Protein 9e-138 99
UMNK88_5237 YP_006136866.1 hypothetical protein VFG1700 Protein 9e-121 74
UMNK88_5237 YP_006136866.1 hypothetical protein VFG1736 Protein 6e-105 63
UMNK88_5237 YP_006136866.1 hypothetical protein VFG1513 Protein 2e-88 61