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Name : topB (UMNK88_5014) Accession : YP_006136654.1 Strain : Escherichia coli UMNK88 Genome accession: NC_017641 Putative virulence/resistance : Unknown Product : DNA topoisomerase TopB Function : - COG functional category : - COG ID : - EC number : - Position : 4896248 - 4898257 bp Length : 2010 bp Strand : + Note : - DNA sequence : ATGCAACTTTATTTGTGTGAAAAACCGTCACAGGCGCGGGATATTGCCCGGGTGCTGGGACTCAGCGGGCGGGGAGAGGG CTGTATTGAAGGCGATACTGTTACGGTCACCTGGGCTGTGGGGCATCTGCTGGAGCTGGCCGCTCCGGAAGCGTACGGGG AGCAGTTCGGGGTTCCCTGGCGTATGGAGTCGCTTCCCGTTCTGCCTGAAAAGTGGCAGATGACGGTTAAACCGCAGACG AAATCCCAGTTTACGGTGATCAGCCGCCTGCTGAAGCGTGCGTCTGAAGTGGTGATCGCCACGGATGCGGACAGGGAAGG AGAAGTCATCGCCCGGGAACTGCTGACGTACTGTCGGTACCGGGGGCCAGTCCGCCGGCTGTGGCTGTCTGCCCTGGATG AGGCCAGCGTCCGGGAGGCGCTGGCAAATATTCTGCCCGGTGAGCAGACGGCCCGTCTGTATGATGCCGGCCTGGCCCGT GGTCAGGCTGACTGGCTAATCGGGATGAACCTGACGCGTCTGTATACCCTTAAAGCCCGGGTGTCGGGGATCCCGGATGT GTTGTCCGTCGGAAGGGTACAGACGCCGACACTTGCCATGGTGGTCAGACGGGATCAGGAGATTGCCGGTTTTGTGCCAC GGCCCTGGTGGCAGGTGTTTGTCGGACTGGAGAAAGACGGGATCCGGTTCCGGGCCGTCTGGGTGGCGGCAGAGCAGTAC TGCGATGAAGAGAAACGGTGCGTGAACGTTCAGGCGGCCCGGGCCGTTCTTCAGTTGTGTCAGCAGACACCGTCAGCGGT GGTGCATGAGGTGACCCGGAAGCGTGAAAAAACACCGGCTCCGCTCTGTTTTTCGCTGGGGACACTGCAGGAAGCCTGCT CCCGGAAATTTGGTATGGGGGCGCAGACTGTGCTGAATATCGCGCAGTCTCTGTATGAGACACACAAGGCCACGACGTAT CCCCGGACGGACTGTGGCTATCTGCCTGAATCCATGCAACAGGAAAGCCGGGAGGTACTGGCGGCAATGGCGCGCTCAGA TCCTGCCCTGACGCCGGTTCTGGCACAGCTCGATCCCGGTTTTGTTTCACGTATCTGGAATGACAAAAAAATTACGGCAC ACCATGCCATCATCCCGACCCGGCAGGTCTTTGATATCAGGGCACTGAGTGAAGATGAGCTGAAGGTGTATCTGCTCATT CGCCAGCATTATCTGGCCCAGTTTCTGCCCCTGCAGGAGTCTGATATTACCGATGCAACACTGACACTCGGCGGGCAACG GTTCAGGGCCCGCGGGAAAGTGAATGTGGTGACGGGCTGGCGAGGCCTGTTTTCCGGGGAAGCAGCAGAAGATGCTGAAG GCGAAGATGAACAGACGACGGAAATGGCGTTGCCGGCGCTTGAACGGGGTGAACACTGCCGGATTAGCGGTTCAGAACTG AAGGGCCGGATGACGTCACCTCCGGCACCTTTTACGGAAGGGACCCTGATTGCCGCCATGAAAAATGCTGCCAGTCAGGT CAGTGATCCGAAGCTGAAAAAAGTGCTGAGGGAGAATGCCGGTCTGGGGACGGAGGCCACGCGGGCCGGTGTGCTGGAGG TGTTATTTGCCCGGCAGTATCTGGAGAAGAGCGGGAAGCATATCCGGTCAACGCAACGGGGCAGGGAACTGACGGCCGCC CTGCCGGAAGCCCTGACCAGCCCGGGCATGACGGCGCTGTGGGAGCAGGCTCTGGATGATATTGCACAGGGCAGAATGTC ACTGGATACCTTTATGGGCAGACAGCAGCAGTGGGTGCGTCATCTGGTTTCATCCGGACGGGAACAGCCCTTCAGTATGA CGGTGCCGGTGATGCCGCCGTGCCCGCTTTGTCAGGGGCCGACCCGGCAGCGAAAGGGAAAGCACGGGCTGTTCCGGAGC TGTCAGCGGTATCCTGAGTGTAAGGGTGTGGTGAACACGCAGAAAAAGGCCGGGCGGCGAAAAAAAACGGGAAAAACTAA AACGGAGTAA Protein sequence : MQLYLCEKPSQARDIARVLGLSGRGEGCIEGDTVTVTWAVGHLLELAAPEAYGEQFGVPWRMESLPVLPEKWQMTVKPQT KSQFTVISRLLKRASEVVIATDADREGEVIARELLTYCRYRGPVRRLWLSALDEASVREALANILPGEQTARLYDAGLAR GQADWLIGMNLTRLYTLKARVSGIPDVLSVGRVQTPTLAMVVRRDQEIAGFVPRPWWQVFVGLEKDGIRFRAVWVAAEQY CDEEKRCVNVQAARAVLQLCQQTPSAVVHEVTRKREKTPAPLCFSLGTLQEACSRKFGMGAQTVLNIAQSLYETHKATTY PRTDCGYLPESMQQESREVLAAMARSDPALTPVLAQLDPGFVSRIWNDKKITAHHAIIPTRQVFDIRALSEDELKVYLLI RQHYLAQFLPLQESDITDATLTLGGQRFRARGKVNVVTGWRGLFSGEAAEDAEGEDEQTTEMALPALERGEHCRISGSEL KGRMTSPPAPFTEGTLIAAMKNAASQVSDPKLKKVLRENAGLGTEATRAGVLEVLFARQYLEKSGKHIRSTQRGRELTAA LPEALTSPGMTALWEQALDDIAQGRMSLDTFMGRQQQWVRHLVSSGREQPFSMTVPVMPPCPLCQGPTRQRKGKHGLFRS CQRYPECKGVVNTQKKAGRRKKTGKTKTE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 60 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 0.0 | 60 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 60 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 59 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 4e-167 | 54 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 3e-159 | 52 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 2e-163 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 6e-145 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 3e-126 | 42 |
