Gene Information

Name : UMNK88_3779 (UMNK88_3779)
Accession : YP_006135478.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3657407 - 3658066 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0487 Protein 4e-40 44
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0638 Protein 6e-31 44
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0083 Protein 1e-36 43
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0347 Protein 9e-34 42
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB NC_002516.2.879194.p Protein 8e-31 41
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0308 Protein 2e-36 41
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0197 Protein 4e-36 41
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB BAC0111 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB VFG0473 Protein 2e-40 47
UMNK88_3779 YP_006135478.1 transcriptional regulatory protein QseB VFG1390 Protein 2e-32 42