Gene Information

Name : UMNK88_2903 (UMNK88_2903)
Accession : YP_006134630.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2814561 - 2815709 bp
Length : 1149 bp
Strand : +
Note : -

DNA sequence : 
ATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCATACCGCCTTCTCGATGGTAATGGCCTGTACCT
TTATGTCCCTGTATCCGGGAAAAAGGTATGGCAGCTTCGCTACAAGATTGACGGTAAGGAGAAAATCCTTACCGTCGGAA
AATATCCGCTTATGACTTTGCAGGAGGCAAGGGATAAAGCATGGACTGCGAGGAAAGACATCTCGGTTGGCATCGATCCG
GTAAAAGCGAAAAAGGCTTCGTCTAACAACAACTCCTTTAGCGCCATTTACAAGGAATGGTACGAGCACAAGAAGCAAGT
CTGGTCAGTAGGGTATGCGACTGAACTTGCAAAAATGTTTGATGACGACATTTTACCTATCATCGGCGGCCTTGAAATTC
AGGATATTGAGCCGATGCAACTGCTGGAAGTAATCCGCAGATTTGAAGATCGCGGTGCAATGGAGCGAGCAAATAAAGCC
CGCAGAAGATGCGGTGAGGTTTTCCGTTACGCTATTGTCACTGGTAGGGCTAAATATAACCCGGCACCTGACCTTGCTGA
CGCCATGAAGGGATACCGCAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCTA
CATTTTCAGGAAGTATCGTATCGCTCATTGCGACCAAAGTTTTACGCTACACAGCCCTCAGAACAAAAGAGCTTCGTTCC
ATGCAATGGAAGAACGTCGATTTTGAAAACAGGATTATCACCATAGACGCCAATGTGATGAAGGGACGCAAGATTCATGT
GGTTCCGATGTCGGACCAGGTAGTTGAACTTCTCACTACGCTAAGCTCCATCACTAAACCAGTATCAGAGTTTGTTTTTG
CCGGACGCAACGATAAGAAGAAGCCAATCTGCGAGAACGCGGTATTGCTTGTGATCAAACAAATCGGCTATGAGGGTCTG
GAAAGCGGTCACGGATTCAGGCATGAATTCAGCACGATTATGAACGAGCACGAATGGCCCGCTGATGCCATTGAGAAGCA
ACTGGCGCACGCTAACAGCGGCTCCATTCGTGGGATATACAATCACGCTCAGTACATGGATAAGCGCCGGGAGATGATGC
AGTGGTGGGCTGATTGGATTGATGAGTAG

Protein sequence : 
MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP
VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA
RRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS
MQWKNVDFENRIITIDANVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL
ESGHGFRHEFSTIMNEHEWPADAIEKQLAHANSGSIRGIYNHAQYMDKRREMMQWWADWIDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-87 49
int ACU09430.1 integrase Not tested LEE Protein 5e-87 49
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-87 49
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-87 49
int CAC39282.1 integrase Not tested LPA Protein 1e-86 49
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-86 49
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-86 49
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-86 49
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-86 49
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-82 48
int AAD44730.1 Int Not tested SHI-2 Protein 2e-85 48
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-78 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_2903 YP_006134630.1 integrase VFG0783 Protein 3e-87 49
UMNK88_2903 YP_006134630.1 integrase VFG0598 Protein 4e-86 49