Gene Information

Name : UMNK88_2889 (UMNK88_2889)
Accession : YP_006134617.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2799596 - 2800348 bp
Length : 753 bp
Strand : -
Note : putative periplasmic pilus chaperone protein

DNA sequence : 
ATGTCTGATTTACTTTGCTCTGCCAAATTGGGTGCTATGACGCTGGCGTTACTGCTTAGCGCTACCAGTTTGTCTGCCCT
GGCGTCTGTAACGCCAGATCGTACCCGTTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGCTGCGTAATAACG
ATCCGAAACTCCCTTATCTGGCTCAAAGCTGGATTGAAGATGAAAAGGGTAACAAGATCACCTCGCCGTTAACTGTGCTG
CCGCCAGTGCAACGCATCGATTCAATGATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCAGC
CGATCGTGAAAGCATGTTCTACTTTAACGTGCGCGAGATCCCGCCAAAATCAAACAAACCCAATACCCTGCAAATCGCGC
TGCAAACGCGTATCAAGTTGTTCTGGCGACCAAAGGCGCTGGAAAAGGTCAGTATGAAAAGTCCGTGGCAGCACAAGGTG
ACGCTCACCCGCAGCGGTCAGGCATTTACCGTCAATAACCCAACGCCGTACTACGTGATCATCAGCAACGCCAGTGCGCA
GAAAAACGGTAATCCGGCTACGGGGTTCTCGCCTCTGGTCATTGAGCCGAAAACCACAGTTCCGCTGAATGTGAAAATGG
ATAGCGTACCGGTGCTGACTTACGTCAACGACTTTGGCGCACGGATGCCACTCTTTTTCCGCTGTGACGGCAACACATGC
CAGGTGGATAAAGATCAAAGTCTCAAGGGATGA

Protein sequence : 
MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKV
TLTRSGQAFTVNNPTPYYVIISNASAQKNGNPATGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFRCDGNTC
QVDKDQSLKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 7e-49 44
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-48 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 4e-48 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 4e-48 43
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 3e-48 43
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 6e-48 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 6e-48 43
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 2e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_2889 YP_006134617.1 hypothetical protein VFG1547 Protein 7e-49 43
UMNK88_2889 YP_006134617.1 hypothetical protein VFG0896 Protein 2e-48 43
UMNK88_2889 YP_006134617.1 hypothetical protein VFG0885 Protein 8e-44 42