Gene Information

Name : fliP (UMNK88_2425)
Accession : YP_006134171.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2329208 - 2329945 bp
Length : 738 bp
Strand : +
Note : -

DNA sequence : 
ATGCGTCGTTTATTGTCTGTCGCACCTGTCCTTCTCTGGCTGATTACGCCCCTCGCCTTCGCGCAACTGCCGGGTATCAC
CAGCCAGCCGCTGCCTGGCGGTGGACAAAGCTGGTCGCTCCCGGTGCAGACGCTGGTGTTCATCACCTCGTTGACGTTCA
TTCCAGCGATTTTACTGATGATGACCAGTTTCACCCGCATCATTATTGTTTTTGGTTTATTGCGTAACGCGCTGGGAACA
CCCTCCGCGCCACCTAACCAGGTATTGCTGGGGCTGGCGCTGTTTTTGACCTTTTTTATTATGTCGCCGGTGATCGATAA
AATTTATGTCGATGCGTACCAGCCATTCAGCGAAGAGAAAATATCAATGCAGGAGGCGCTGGAAAAAGGGGCGCAGCCGC
TGCGTGAGTTTATGCTGCGTCAGATCCGTGAGGCGGATTTAGGGTTGTTTGCCAGACTGGCGAATACTGGCCCGTTGCAG
GGACCTGAAGCCGTGCCGATGCGCATTTTGCTCCCGGCCTACGTGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTT
CACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATTGCCAGCGTGTTGATGGCATTGGGGATGATGATGGTCCCCC
CCGCCACCATTGCTCTGCCCTTTAAACTGATGTTGTTTGTACTGGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGGCG
CAGAGCTTTTACAGCTAG

Protein sequence : 
MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT
PSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQIREADLGLFARLANTGPLQ
GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
QSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-29 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-25 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-25 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-25 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-31 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-29 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-29 42
escR AAC31528.1 L0049 Virulence LEE Protein 9e-30 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-29 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-30 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-30 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-28 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-30 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-28 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-29 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-29 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-29 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-29 41
escR AAC38369.1 EscR Virulence LEE Protein 6e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-91 85
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-75 67
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-64 61
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG2016 Protein 4e-60 56
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG0188 Protein 5e-34 43
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-31 42
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG0827 Protein 5e-30 42
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-29 41
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG0044 Protein 8e-33 41
fliP YP_006134171.1 flagellar biosynthetic protein FliP VFG0715 Protein 3e-29 41