Gene Information

Name : UMNK88_1268 (UMNK88_1268)
Accession : YP_006133047.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1257996 - 1259567 bp
Length : 1572 bp
Strand : -
Note : putative transposase

DNA sequence :
ATGGACACCTCACTTGCTCATGAGAATGCCCGCCTGCGGGCACTGTTGCAGACGCAACAGGACACCATCCGCCAGATGGC
GAAATACAACCGCCTGCTCTCACAGCGGGTGGCGGCTTATGCTTCCGAAATCAACCGGCTGAAGGCGCTGGTTGCGAAAC
TGCAACGTATGCAGTTCGGTAAAAGCTCAGAAAAACTTCGTGCAAAAACCGAACGGCAGATACAGGAAGCACAGGAGCGA
ATCAGCGCACTTCAGGAAGAAATGGCGGAAACGCTGGGTGAGCAATATGACCCGGTACTGCCATCCGCCCTGCGCCAGTC
TTCAGCCCGTAAACCGTTACCGGCCTCACTTCCCCGTGAAACCCGGGTTATCCGGCCGGAAGAGGAATGCTGTCCTGCCT
GTGGTGGTGAACTCAGTTCTCTGGGATGTGATGTGTCAGAGCAACTGGAGCTTATCAGCAGCGCCTTTAAGGTTATCGAA
ACACAACGTCCGAAACTGGCCTGTTGCCGGTGCGACCATATCGTGCAGGCACCGGTGCCTTCAAAACCCATTGCACGCAG
TTATGCCGGAGCGGGGCTTCTGGCCCATGTTGTTACCGGGAAATATGCAGACCATCTGCCGTTATACCGCCAGTCAGAAA
TATACCGTCGCCAGGGCGTGGAGCTGAGCCGCGCCACGCTGGGGCGCTGGACAGGTGCCGTTGCTGAACTGCTGGAGCCG
CTGTATGACGTCCTGCGCCAGTATGTGCTGATGCCCGGTAAAGTCCATGCGGATGATATCCCCGTTCCGGTCCAGGAGCC
GGGCAGTGGTAAAACAAGAACTGCCCGGCTGTGGGTCTATGTCCGTGATGACCGTAACGCCGGTTCACAGATGCCCCCGG
CGGTCTGGTTCGCGTACAGCCCGGACCGGAAAGGTATCCATCCACAGAATCACCTGGCCGGTTACAGCGGTGTGCTTCAG
GCAGATGCTTACGGTGGTTACCGGGCGTTATACGAATCCGGCAGAATAACGGAAGCCGCGTGTATGGCCCATGCCCGGAG
AAAAATCCACGATGTGCATGCAAGAGTGCCAACCGACATCACCACGGAAGCCCTGCAGCGTATCGGTGAACTGTATGTCA
TCGAGGCAGAAGTCCGGGGATGTTCAGCAGAACAGCGTCTGGCAGCAAGAAAAGCCAGAGCGGCTCCACTGATGCAGTCA
CTGTATGACTGGATACAGGAACAGATGAAAACACTGTCGCGTCACTCGGATACGGCAAAAGCGTTCGCATACCTGCTGAA
ACAGTGGGAGGCCCTGAACGTGTACTGCAGTAATGGCTGGGTGGAAATCGACAACAACATCGCAGAGAACGCCTTACGGG
GAGTGGCCGTAGGCCGGAAAAACTGGCTCTTCGCGGGTTCCGACAGCGGTGGCGAACATGCGGCGGTGTTGTACTCGCTG
ATCGGCACATGCCGTCTGAACAATGTGGAACCAGAAAAATGGCTGCGTTACGTCATTGAGCATATCCAGGATTGGCCGGC
AAACCGGGTACGCGATCTGTTGCCCTGGAAAGTTGATCTGACCTCTCAGTAA

Protein sequence :
MDTSLAHENARLRALLQTQQDTIRQMAKYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQER
ISALQEEMAETLGEQYDPVLPSALRQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIE
TQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEP
LYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQ
ADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYVIEAEVRGCSAEQRLAARKARAAPLMQS
LYDWIQEQMKTLSRHSDTAKAFAYLLKQWEALNVYCSNGWVEIDNNIAENALRGVAVGRKNWLFAGSDSGGEHAAVLYSL
IGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLTSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 0.0 99
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-115 68
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-138 64
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 2e-138 63
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 7e-128 62
unnamed AAC31494.1 L0015 Not tested LEE Protein 1e-132 60
tnp AEA34686.1 transposase Not tested Not named Protein 2e-133 60
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 6e-132 60
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 6e-132 60
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-132 60
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 1e-132 60
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 1e-132 60
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 1e-132 60
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 1e-132 60
unnamed AAL57570.1 unknown Not tested LEE Protein 9e-133 60
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-132 60
unnamed AAL08460.1 unknown Not tested SRL Protein 2e-92 58
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 6e-111 55
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-110 54
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-110 54
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 4e-121 53
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 1e-72 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_1268 YP_006133047.1 hypothetical protein VFG1700 Protein 9e-116 68
UMNK88_1268 YP_006133047.1 hypothetical protein VFG0793 Protein 5e-133 60
UMNK88_1268 YP_006133047.1 hypothetical protein VFG1051 Protein 1e-92 58
UMNK88_1268 YP_006133047.1 hypothetical protein VFG1736 Protein 1e-90 54