Gene Information

Name : UMNK88_1188 (UMNK88_1188)
Accession : YP_006132967.1
Strain : Escherichia coli UMNK88
Genome accession: NC_017641
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1198668 - 1200200 bp
Length : 1533 bp
Strand : -
Note : putative transposase

DNA sequence :
ATGAACGACATCTCTTCTGACGACATCTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAACTCCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGAGAGCGATACGCTG
ACTGGTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCCCCCGTAAGCCGTTCCCTGAATCACTACC
CCGTGACGAAAAGCGACTGTTGCCAGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTATCTGGGCGAGGATA
CCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCT
GACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGGCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTCATGACT
GACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACCGGGCGGTTGTGGGCGTA
TGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCC
ATCCGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCAAT
GGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTCCGCATCCCGTCAGCACT
GACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGC
TTGCTGAACGTCAGCGAAAAACGAAACCGTTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACCCTGTCG
CGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCACTGACGTACTATGCGAACGATGGCTG
GGTGGAAATCGACAACAACATCGCTGAAAATGCCCTGCGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCTTCGGCT
CTGATCATGGTGGTGAGCGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGTGGATCCAGAAAGC
TACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGGTCAGCGAACTGCTTCCGTGGCGCATAGCACT
GCCAGCTGAATAA

Protein sequence :
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTL
TGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLLPGNKKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFSGVLQADAYAGFNELYRN
GGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLS
RHSELAKAFAYALNQWPALTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPES
YLRHVLGVIADWPVNRVSELLPWRIALPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 99
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 99
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 99
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 99
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 99
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 99
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 99
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 99
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 99
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 99
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 98
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 98
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 96
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-162 92
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 9e-154 64
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 9e-154 64
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 9e-150 63
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 3e-104 62
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 5e-139 60
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-99 59
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-127 55
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-115 54
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 9e-116 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMNK88_1188 YP_006132967.1 hypothetical protein VFG0793 Protein 0.0 99
UMNK88_1188 YP_006132967.1 hypothetical protein VFG1051 Protein 0.0 96
UMNK88_1188 YP_006132967.1 hypothetical protein VFG1700 Protein 1e-162 92
UMNK88_1188 YP_006132967.1 hypothetical protein VFG1513 Protein 2e-104 62
UMNK88_1188 YP_006132967.1 hypothetical protein VFG1736 Protein 3e-122 62