Gene Information

Name : yghJ (ECDH1ME8569_2872)
Accession : YP_006130273.1
Strain : Escherichia coli DH1
Genome accession: NC_017638
Putative virulence/resistance : Virulence
Product : putative inner membrane lipoprotein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3092457 - 3096887 bp
Length : 4431 bp
Strand : -
Note : -

DNA sequence :
TTGCCGGAAGTGAAACCTGATCCAACACCAAACCCGGAGCCGACGCCTGAGCCAACGCCGGACCCAGAGCCTACGCCAGA
ACCGATACCTGATCCTGAACCAACACCAGAACCGGAGCCAGAACCTGTTCCTACGAAAACGGGTTATCTGACCCTGGGCG
GAAGCCAGCGGGTAACTGGTGCTACCTGTAATGGTGAATCCAGCGATGGCTTTACATTTAAACCTGGCGAGGACGTTACT
TGCGTGGCGGGTAACACGACAATTGCCACCTTCAACACTCAGTCAGAAGCTGCGCGTAGCTTGCGTGCGGTTGAAAAAGT
GTCGTTTAGCCTTGAGGACGCGCAAGAACTGGCGGGCTCCGATGACAAGAAAAGCAATGCGGTTTCGCTGGTAACGTCCA
GTAACAGCTGTCCGGCGAATACAGAACAGGTTTGTCTGACGTTCTCCTCGGTGATCGAGAGTAAACGCTTCGACTCGCTG
TATAAGCAAATCGATCTGGCACCGGAAGAGTTCAAAAAGCTGGTCAATGAAGAGGTGGAAAACAATGCTGCGACCGATAA
AGCGCCATCCACTCATACTTCACCGGTCGTGCCCGTCACCACGCCGGGAACAAAACCGGATCTGAACGCTTCCTTCGTGT
CGGCTAACGCGGAACAGTTTTATCAGTATCAACCCACTGAAATCATTCTCTCTGAAGGTCGACTGGTCGATAGCCAGGGA
TATGGTGTTGCTGGCGTCAACTACTACACCAATTCAGGCCGTGGCGTGACAGGGGAAAATGGTGAATTTTCCTTTAGCTG
GGGCGAAACCATCTCCTTTGGTATCGATACCTTTGAACTGGGTTCAGTGCGCGGCAATAAGTCGACCATTGCGCTGACTG
AACTGGGTGATGAAGTTCGCGGGGCGAATATTGATCAGCTTATTCATCGCTATTCGACGACCGGGCAAAATAATACCCGT
GTTGTTCCGGACGATGTACGCAAGGTCTTTGCCGAATATCCCAACGTGATCAACGAGATTATCAATCTCTCGTTATCCAA
CGGTGCGACGCTGGGGGAAGGTGAGCAAGTCGTTAATCTGCCTAACGAATTTATTGAGCAGTTTAATACGGGTCAGGCCA
AAGAGATCGATACCGCGATTTGTGCGAAAACCGATGGTTGTAACGAGGCTCGCTGGTTCTCGCTGACGACGCGCAATGTT
AATGACGGCCAGATTCAGGGCGTTATCAACAAGCTGTGGGGCGTGGATACGAACTACAAATCTGTCAGCAAGTTCCATGT
ATTCCATGACTCCACCAACTTCTATGGCAGCACGGGTAATGCGCGCGGTCAGGCGGTGGTGAATATCTCCAACGCGGCCT
TCCCGATTCTGATGGCGCGTAATGATAAAAACTACTGGCTGGCCTTCGGCGAAAAACGCGCCTGGGATAAAAACGAGCTG
GCGTACATTACGGAAGCGCCTTCTCTTGTTGAGCCGGAAAACGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTTAT
TTCGCTGGGGCAAGTCGGTGAGGGCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTTGCGTTGCCCGAACG
GTTACAGCTGGAACGGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAACTTCATG
GAGAACGTGCTGCGCTATCTGTCCGACGATAAATGGAAGCCGGACGCGAAAGCCAGCATGACCGTAGGCACCAACCTGGA
TACTGTCTATTTTAAACGTCATGGTCAGGTTACAGGAAACAGCGCTGCGTTCGACTTCCATCCGGATTTTGCGGGCATCT
CTGTTGAGCATTTAAGTAGCTATGGCGATCTCGATCCGCAGGAAATGCCGCTGCTGATCCTTAACGGCTTTGAATATGTG
ACTCAGGTGGGTAACGATCCTTATGCAATCCCGCTGCGTGCAGATACCAGCAAACCGAAGCTGACTCAGCAGGATGTGAC
CGATCTGATCGCCTATCTGAACAAAGGTGGATCGGTGCTGATCATGGAAAACGTGATGAGCAATCTTAAGGAAGAGAGCG
CGTCTGGTTTTGTGCGTCTGTTGGATGCCGCAGGTCTGTCGATGGCACTGAACAAGTCGGTAGTAAATAACGATCCGCAA
GGGTATCCGAACCGCGTTCGTCAGCAGCGCGCAACGGGCATTTGGGTCTATGAACGTTATCCTGCCGTAGATGGTGCGCT
GCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGC
TGGAAGTTGCCAGCTGGCTGGAAGATGTAGATGGCAAACAGGAAACGCGTTATGCCTTTATTGATGAGGCCGATCATAAA
ACAGAGGATTCTCTGAAGGCTGCGAAGGAGAAAATTTTCGCCGCGTTCCCGGGGCTGAAAGAGTGTACTAATCCGGCATA
TCACTATGAGGTCAACTGCCTGGAATATCGTCCTGGCACGGGGGTTCCGGTTACTGGTGGCATGTATGTTCCACAGTATA
CGCAACTAAGCCTTAACGCCGACACTGCAAAAGCGATGGTGCAGGCTGCGGATTTAGGCACCAACATTCAGCGTCTGTAT
CAGCATGAGCTCTACTTCCGGACCAATGGTCGCAAAGGTGAGCGTCTGAGCAGCGTCGATCTGGAACGTCTGTACCAGAA
CATGTCGGTCTGGCTGTGGAACGATACGAGCTATCGTTATGAAGAAGGCAAAAATGACGAGCTGGGCTTTAAAACGTTCA
CCGAGTTCCTGAACTGCTACGCCAATGATGCCTATGCAGGCGGCACCAAGTGTTCTGCAGATCTGAAAAAATCGCTGGTC
GATAACAACATGATCTACGGTGACGGTAGCAGCAAAGCGGGCATGATGAACCCGAGCTACCCGCTCAACTATATGGAAAA
ACCGCTGACACGCCTGATGCTGGGCCGTTCCTGGTGGGATCTGAACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCAG
TATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAG
TCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTGGC
GCTGGCTGACGACCTGACCGGACGTGAGAAGCATGAAGTTGCGCTGAACCGTCCGCCAAGAGTGACTAAAACGTACTCTC
TGGACGCTAGCGGTACGGTGAAGTTCAAGGTGCCTTACGGTGGCCTGATTTATATCAAGGGCAATAGCTCTACCAATGAA
TCTGCCAGCTTCACCTTTACTGGCGTGGTAAAAGCACCGTTCTATAAAGACGGCGCATGGAAAAACGATCTGAACTCACC
GGCTCCGCTGGGTGAGCTGGAATCAGACGCTTTCGTCTATACCACACCGAAGAAGAACCTGAATGCCAGCAATTACACTG
GCGGACTGGAGCAATTCGCTAACGATCTGGATACCTTTGCCAGCTCGATGAATGACTTCTACGGCCGTGATAGCGAAGAC
GGTAAGCACCGGATGTTTACCTATAAAAACTTGCCGGGCCACAAACATCGTTTCACCAACGATGTGCAGATCTCCATCGG
TGATGCGCATTCGGGTTATCCGGTAATGAACAGCAGCTTCTCGCCGAACAGCACCACGCTGCCGACGACGCCGCTGAACG
ACTGGCTGATCTGGCATGAAGTCGGTCATAACGCCGCAGAAACGCCGTTGACTGTACCGGGTGCAACTGAAGTCGCTAAC
AACGTGCTGGCGCTGTACATGCAGGATCGTTATCTCGGCAAGATGAACCGTGTCGCTGACGATATTACCGTCGCACCGGA
ATATCTGGAGGAGAGCAACAACCAGGCATGGGCACGCGGCGGTGCGGGTGACCGTCTGCTGATGTACGCACAGCTGAAGG
AATGGGCAGAGAAAAACTTTGATATCAAGAAATGGTATCCAGATGGCACTCCTCTGCCAGAGTTTTACAGCGAGCGTGAA
GGGATGAAAGGCTGGAACCTGTTCCAGTTGATGCATCGTAAAGCACGCGGCGATGAGGTCAGCAATGACAAGTTTGGCGG
CAAGAATTACTGTGCTGAATCCAACGGTAACGCAGCGGACACGCTGATGCTGTGTGCCTCCTGGGTCGCCCAGACGGATC
TTTCGGAGTTCTTTAAGAAATGGAATCCGGGCGCGAATGCTTACCAGCTGCCGGGGGCGAGCGAGATGAGCTTCGAGGGC
GGTGTGAGCCAGTCGGCTTACAACACGCTCGCGTCACTCGATCTGCCGAAACCGGAACAGGGACCGGAAACCATTAATCA
GGTTACCGAGCATAAGATGTCTGCCGAGTAA

Protein sequence :
MPEVKPDPTPNPEPTPEPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPGEDVT
CVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSL
YKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPVVPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQG
YGVAGVNYYTNSGRGVTGENGEFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTR
VVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFNTGQAKEIDTAICAKTDGCNEARWFSLTTRNV
NDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYGSTGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNEL
AYITEAPSLVEPENVTRDTATFNLPFISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFM
ENVLRYLSDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQEMPLLILNGFEYV
TQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQ
GYPNRVRQQRATGIWVYERYPAVDGALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDEADHK
TEDSLKAAKEKIFAAFPGLKECTNPAYHYEVNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLY
QHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSADLKKSLV
DNNMIYGDGSSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNMQ
STGLWAPAQKEVTIKSNANVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDASGTVKFKVPYGGLIYIKGNSSTNE
SASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSED
GKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVAN
NVLALYMQDRYLGKMNRVADDITVAPEYLEESNNQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSERE
GMKGWNLFQLMHRKARGDEVSNDKFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEG
GVSQSAYNTLASLDLPKPEQGPETINQVTEHKMSAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85238.1 hypothetical protein Not tested PAI V 536 Protein 0.0 92
VC0395_A0370 YP_001216326.1 lipoprotein Not tested VPI-1 Protein 0.0 49
VC0845 NP_230493.1 hypothetical protein Not tested VPI-1 Protein 0.0 49
acfD AAK20802.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75646.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75664.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75670.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75661.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75658.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75667.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 49
acfD ACK75655.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75652.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48
acfD ACK75649.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghJ YP_006130273.1 putative inner membrane lipoprotein VFG0106 Protein 0.0 49