Gene Information

Name : yghF (ECDH1ME8569_2869)
Accession : YP_006130270.1
Strain : Escherichia coli DH1
Genome accession: NC_017638
Putative virulence/resistance : Virulence
Product : putative type II secretion protein GspC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3089961 - 3090827 bp
Length : 867 bp
Strand : -
Note : -

DNA sequence : 
ATGTTCTGGCTGATGCTGCTTATTATTTCTGCAAAAATGGCGCATTCACTCTGGCGCTATATCTCCTTTTCTGCGGAATA
TACGGCGGTTTCTCAACCGGTGAATAAACCGAGCCGTGTGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCA
GCCAGCAAAACTGGTTTGGCAAATATCAGCCTGTCGCCGCGCAGGTAAAACAACCCGAACCTGTGCCTGTGGCAGAAACG
CGTCTTAATGTGGTGCTGCGTGGGATCGCCTTTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGTAAACAGCAGGT
CTATTTGCAGGGTGAAACGCTTGGCTCTCACAACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGTTATC
AGGGAAAAATAGAGCGTCTGAGTCTGGCAGAAGAGGAACGTTCCACTGTTGCTGTGACCAACAAAAAAGCCGTCAGTGAC
GAAGCAAAGCAAGCTGTTGCTGAGCCTGCTGTCAGTGTGCCAGTTGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAA
AGATCCGCAGAAAATTTTTAACTATATCCAGCTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGCGAAGCCGG
GGGCAGATCGTTCTCTGTTCGATGCCAGCGGTTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACT
GATCCACGAGCAATGATTGCTCTGATGCGGCAGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGC
GCGCCACGACATTTCCATCGCGCTGCGCTACCGACTATTCTGCCCGCCTTACTGGAAGAAGAGCTGA

Protein sequence : 
MFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKPSRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAET
RLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSD
EAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFT
DPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRYRLFCPPYWKKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-112 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghF YP_006130270.1 putative type II secretion protein GspC VFG2046 Protein 1e-111 93