Gene Information

Name : yfcS (ECDH1ME8569_2274)
Accession : YP_006129675.1
Strain : Escherichia coli DH1
Genome accession: NC_017638
Putative virulence/resistance : Virulence
Product : putative periplasmic pilus chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2436465 - 2437217 bp
Length : 753 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTGATTTACTTTGCTCTGCCAAATTGGGTGCTATGACGCTGGCGTTACTGCTTAGCGCTACCAGTTTGTCTGCCCT
GGCGTCTGTAACGCCAGATCGTACCCGTTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGCTGCGTAATAACG
ATCCGAAACTCCCTTATCTGGCTCAAAGCTGGATTGAAGATGAAAAGGGTAACAAGATCACCTCGCCGTTAACTGTGCTG
CCGCCAGTGCAACGCATCGATTCAATGATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCAGC
CGATCGTGAAAGCATGTTCTACTTTAACGTGCGCGAGATCCCGCCAAAATCAAACAAACCCAATACCCTGCAAATCGCGC
TGCAAACGCGTATCAAGTTGTTCTGGCGACCAAAGGCGCTGGAAAAGGTCAGTATGAAAAGTCCGTGGCAGCACAAGGTG
ACGCTCACCCGCAGCGGTCAGGCATTTACCGTCAATAACCCAACGCCGTACTACGTGATTATCAGCAACGCCAGTGCGCA
GAAAAACGGTAATCCAGCTGCAGGGTTCTCGCCTCTGGTCATTGAGCCGAAAACCACGGTACCGCTGAATGTGAAAATGG
ATAGCGTACCGGTGCTGACTTACGTCAACGACTTTGGCGCACGGATGCCGCTGTTCTTCCAGTGCAATGGCAACAGCTGC
CAGGTGGATGAAGAGCAGAGCCGCAAAGGCTGA

Protein sequence : 
MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKV
TLTRSGQAFTVNNPTPYYVIISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSC
QVDEEQSRKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 2e-48 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 5e-48 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 7e-48 44
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 4e-49 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 9e-48 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 9e-48 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 7e-48 43
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 3e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfcS YP_006129675.1 putative periplasmic pilus chaperone VFG1547 Protein 1e-48 44
yfcS YP_006129675.1 putative periplasmic pilus chaperone VFG0896 Protein 4e-48 43
yfcS YP_006129675.1 putative periplasmic pilus chaperone VFG0885 Protein 1e-43 42