Gene Information

Name : gspC (ECW_m3236)
Accession : YP_006125852.1
Strain : Escherichia coli W
Genome accession: NC_017635
Putative virulence/resistance : Virulence
Product : type II secretion system lipoprotein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3321243 - 3322073 bp
Length : 831 bp
Strand : -
Note : -

DNA sequence :
ATGTTCTGGCTGATGCTGCTTATTATTTCTGCAAAAGTGGCGCATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATA
TACGGCTGTTTCCCCATCGGCGAATAAACCGCCCCGTGCGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCA
GCCAGCAAAACTGGTTTGGCAAATATCAGCCCGTCGCCACGCCGGTAAAACAACCCGAACCTGTGCCTGTGGCAGAAACG
CGTCTTAATGTGGTGCTGCGCGGGATTGCCTTTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGTAAACAGCAGGT
CTATTTGCAGGGTGAAACGCTTGGCTCGCACAATGCGGTGATTGAGGAAATCAATCGCGACCATGTGATGCTGCGCTATC
AGGGAAAAATAGAGCGCCTGAGCCTGGCAGAAGAGGGGCATTCCACCGTAGCCGTGACCAACAAAAAAGCTGTCAGTGAC
GAAGCAAAGCAAGCTGTTGCTGAACCTGCTGTCAGTGCGCCAGTGGAGATCCCGACTGCCGTGCGTCAGGCACTGGCGAA
AGATCCGCAGAAAATTTTTAACTATATCCAGCTTACGCCTGTGCGTAAGGAGGGAATTGTCGGTTATGCAGTGAAGCCGG
GGGCAGATCGTTCTCTGTTCGATGCCAGCGGTTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACT
GATCCACGAGCAATGATTGCTCTGATGCGGCAGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGC
GCGCCACGACATTTCCATCGCGCTGCGCTAA

Protein sequence :
MFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKPPRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAET
RLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEGHSTVAVTNKKAVSD
EAKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFT
DPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-118 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspC YP_006125852.1 type II secretion system lipoprotein C VFG2046 Protein 4e-117 94