Gene Information

Name : ygeJ (ECW_m3101)
Accession : YP_006125730.1
Strain : Escherichia coli W
Genome accession: NC_017635
Putative virulence/resistance : Virulence
Product : putative lytic transglycosylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3184141 - 3184515 bp
Length : 375 bp
Strand : +
Note : -

DNA sequence : 
ATGTTCAGAATCGAACCAAATTTAATTAAAGCTATCGCTCTTGTTGAAAGCAATCTAAAAAAGGATAGCATAGGCAAGAA
CAGAGATAAGAATAACAATATAAAGAGTTTAGATTATTGGTTAATGCAGATAAACCAGATGCATATTCCCCTGTTAAAAA
AACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATAT
AACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAA
GAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAG

Protein sequence : 
MFRIEPNLIKAIALVESNLKKDSIGKNRDKNNNIKSLDYWLMQINQMHIPLLKKRGIIKDERDLLDNPCLNIKIGTEILY
NHFSRCGVTWQCLGTYNAGFAMDNQKKRQQYAPKYILYIPGLMN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3711 NP_311738.1 hypothetical protein Not tested LIM Protein 4e-46 91
pilT NP_458636.1 putative membrane protein Virulence SPI-7 Protein 2e-23 51
pilT NP_807847.1 hypothetical protein Virulence SPI-7 Protein 2e-23 51
pilT AAC98888.1 PilT Virulence SPI-7 Protein 2e-23 51
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 9e-14 41
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 8e-14 41
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 6e-14 41
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 6e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygeJ YP_006125730.1 putative lytic transglycosylase VFG0539 Protein 2e-14 41