Gene Information

Name : NRG857_16485 (NRG857_16485)
Accession : YP_006121639.1
Strain : Escherichia coli NRG 857C
Genome accession: NC_017634
Putative virulence/resistance : Virulence
Product : general secretory pathway component, cryptic
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3477155 - 3478351 bp
Length : 1197 bp
Strand : +
Note : COG1459 Type II secretory pathway, component PulF

DNA sequence : 
ATGAATTATCGCTATCGCGCCATGACCCTGGATGGTCAAAAATTGCAGGGGATCATTGATGCTAACGATGAACGTCAGGC
ACGACTGCGGCTGCGTGAAGAAGGGCTTTTCCTGTTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCC
CGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAG
AGCCTTGCCGTAATTGGTCAACAAAGCAGTAATAATCGACTGGCTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGA
AGGGCATCCCCTTTCCGATGCGTTACAACATTTTCCCACGCTTTTCGATTCGCTCTACCGTACCCTGGTAAAAGCGGGCG
AAAAGAGCGGTCTGCTGGCCCCGGTGTTGGAAAAGCTGGCTGATTACAATGAAAACCGGCAGAAAATCCGCAGCAAGCTC
ATTCAGTCACTGATCTACCCCTGCATGCTCACTACGGTGGCGATTGTGGTCGTGATTATTCTCCTCACTGCTGTCGTGCC
CAAAATTACCGAACAGTTTGTGCATATGAAGCAGCAACTGCCACTGAGTACACGCATTCTTTTAGGTCTGAGCGACACGT
TGCAACATACCGGCCCGACATTACTAGCGACAGTGTTTATTGTCGCTGTAGGTTTCTGGCTCTGGTTAAAACGCGGCAAT
AACCGCCACCGTTTTCATGCCATGTTGCTGCGCGTTGTACTCATCGGCCCGCTGATTTGCGCCATTAACAGCGCACGCTA
TCTCCGCACTTTAAGTATTTTGCAATCCAGCGGCGTCCCTCTGCTGGATGGGATGAATTTGTCCACCGAAAGTCTCAGCA
ACCTCGAAATCCGCAAGCGTCTGGCAAATGCGGCAGAAAACGTTCGGCAGGGTAACAGCATTCATCTTTCGCTGGAACAA
ACCGCAATCTTCCCGCCGATGATGCTCTACATGGTGGCCTCTGGCGAAAAAAGCGGGCAGCTCGGCACATTGATGGTCAG
GGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCCGCACTCATTATTA
CGATGGCACTGATCGTCCTGTTTATTGTCGTCTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAACTAA

Protein sequence : 
MNYRYRAMTLDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEE
SLAVIGQQSSNNRLADVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKL
IQSLIYPCMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQHTGPTLLATVFIVAVGFWLWLKRGN
NRHRFHAMLLRVVLIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLSNLEIRKRLANAAENVRQGNSIHLSLEQ
TAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 8e-56 44
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 6e-55 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NRG857_16485 YP_006121639.1 general secretory pathway component, cryptic VFG2049 Protein 4e-52 42
NRG857_16485 YP_006121639.1 general secretory pathway component, cryptic VFG0181 Protein 1e-60 41