Gene Information

Name : NRG857_14705 (NRG857_14705)
Accession : YP_006121285.1
Strain : Escherichia coli NRG 857C
Genome accession: NC_017634
Putative virulence/resistance : Virulence
Product : putative type II secretion protein GspC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3112931 - 3113890 bp
Length : 960 bp
Strand : -
Note : COG3031 Type II secretory pathway, component PulC

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGTACGAATTTATCTCATTCAGTTGCTGACAAAAATTCGTCACACTCTTAGCCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATGGTGCGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCCTCATCGGCGAATAAACCG
CTCCGTGCGGATGCAAAACCGTTCGATAAAAATGACGTGCAATTAGTCAGCCAACAAAACTGGTTTGGCAAATATCAACC
CGTCGCCGCACCGGTAAAACAACCTGAATCTGCGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGCGGGATCGCCT
TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGCAAACAGCAGGTCTATTTGCAGGGGGAACGGCTTGGCTCTCAC
AACGCAGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGGAAAATGGAACGTCTGAGTCTGGCAGA
GGAGGAACGCCCCCCTGTGGCGGTGACCAGCAAAAAAGCCGCCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG
CCAGTGCGCCAGTGGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAACCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTTAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCACTGCGCTAA

Protein sequence : 
MARVVFRDVRIYLIQLLTKIRHTLSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSANKP
LRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKMERLSLAEEERPPVAVTSKKAASDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-112 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NRG857_14705 YP_006121285.1 putative type II secretion protein GspC VFG2046 Protein 2e-108 93