Gene Information

Name : ETEC_3899 (ETEC_3899)
Accession : YP_006117440.1
Strain : Escherichia coli ETEC H10407
Genome accession: NC_017633
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4215932 - 4217122 bp
Length : 1191 bp
Strand : +
Note : -

DNA sequence :
ATGGCATTAACCGATATTAAAGTGAAAACCGCAAAACCAAAAGAAAAGCCCTATAAACTTGCTGATGGCGGCGGTATGTA
TCTACTGATTAACACTAATGGTTCTAAATACTGGCGTATGAAGTACCGCTTTGCTGGTAAAGAAAAGATGCTTTCTATTG
GCGTATACCCCGATGTAACGCTAGCCGACGCTCGTGAAAAACGCAGCGAAGCCAGAAAAATCCTCGCTGCTGGAGGCAAT
CCAGGGGTGGCAAAAAAAGAAGAAAAAATCGCGCAACAAATGAGTTTGAAAAATACGTTCGAGGCCATTGCTCGCGAATG
GCATCAGTCAAAAGCCGATCGGTGGTCATTACGCTATCGTGATGAAATCATTGATACCTTTGAAAAAGACATTTTTCCCT
ACATTGGCAAACGCCCTATCGCCGAAATCAAACCAATGGAGTTACTGGAAGCACTGCGTAAAATGGAAAAACGTGGAGCT
CTGGAGAAAATGCGCAAAGTCCGCCAGCGCTGTGGTGAAGTGTTCCGCTATGCAATTGTTACTGGTCGGGCAGACTACAA
CCCTGCTCCCGATCTTGCCTGTGCTTTAGCTACACCGAAAAAAGTACATTTTCCCTTTCTTACTGCTAATGAACTTCCCC
ACTTCCTCAACGATCTGGCGGGTTATACCGGAAGTATCATCACTAAGACAGCTACTCAGATCATTATGTTAACTGGTGTA
CGAACACAAGAATTACGTTTCGCACGCTGGGAGGATATCGATTTTGAGACAAAATTATGGGAGATTCCGGCAGAAGTAAT
GAAGATGAAGCGACCTCATATTGTGCCGCTCTCTGAGCAGGTCATTGCCCTATTTAAGCAACTTGAACCCATCACAAAAC
ATCATCCTCTGGTCTTTATCGGTAGGAACGATCCTCGCAAGCCAATTAGTAAGGAAAGCATTAACCAAGTCATTGAATTA
CTGGGATATAAGGGAAGACTCACAGGGCACGGTTTCAGACACACCATGAGTACCATTCTGCACGAACAGGGCTTTAATTC
CGCCTGGATTGAAATGCAGTTAGCTCATGTGGATAAAAACGCCATCAGGGGTACCTATAATCATGCCCAGTATCTCGATG
GTCGCCGTGAAATGATGCAGTGGTACGCAGATTATATTGATTCGCTTTATAAGCAAGAGAGTCAGGGTTAA

Protein sequence :
MALTDIKVKTAKPKEKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKILAAGGN
PGVAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGA
LEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLACALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIALFKQLEPITKHHPLVFIGRNDPRKPISKESINQVIEL
LGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNAIRGTYNHAQYLDGRREMMQWYADYIDSLYKQESQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec33 AAW51716.1 Int Not tested AGI-3 Protein 0.0 97
int CAC39282.1 integrase Not tested LPA Protein 0.0 97
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 0.0 97
ECs4534 NP_312561.1 integrase Not tested LEE Protein 0.0 97
int AAC31482.1 CP4-like integrase Not tested LEE Protein 0.0 97
int ACU09430.1 integrase Not tested LEE Protein 0.0 97
int AAD44730.1 Int Not tested SHI-2 Protein 0.0 96
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 0.0 96
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 0.0 96
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 0.0 96
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-124 62
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 5e-126 62
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-75 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-81 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-81 43
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-83 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-83 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-81 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-82 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-83 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 7e-83 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-83 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 9e-84 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-82 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-83 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-83 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-82 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-83 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-82 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-83 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-83 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-83 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-83 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 9e-75 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-83 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETEC_3899 YP_006117440.1 integrase VFG0783 Protein 0.0 97
ETEC_3899 YP_006117440.1 integrase VFG0598 Protein 0.0 96
ETEC_3899 YP_006117440.1 integrase VFG0626 Protein 4e-84 42
ETEC_3899 YP_006117440.1 integrase VFG1693 Protein 1e-83 41
ETEC_3899 YP_006117440.1 integrase VFG1536 Protein 5e-75 41