Gene Information

Name : hofF (ETEC_3579)
Accession : YP_006117119.1
Strain : Escherichia coli ETEC H10407
Genome accession: NC_017633
Putative virulence/resistance : Virulence
Product : putative general secretion pathway protein F (protein transport protein HofF)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3846492 - 3847487 bp
Length : 996 bp
Strand : +
Note : -

DNA sequence : 
TTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACT
GGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGC
TTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAAGAGCGGGCTGCTGGCCCCGGTGTTGGAAAAGCTGGCT
GATTACAATGAAAACCGGCAGAAAATCCGCAGCAAGCTCATTCAGTCACTGATCTACCCCTGTATGCTCACTACGGTGGC
GATTGGGGTAGTGATTATTCTCCTCACTGCTGTCGTGCCCAAAATTACCGAACAGTTCGTGCATATGAAGCAGCAACTGC
CGCTGAGTACACGCATTCTTTTAGGTCTGAGCGACACGTTGCAACGTACCGGCCCGACATTATTAGCGACAGTGTTTATT
GTCGCTGTAGGTTTCTGGCTCTGGTTAAAACGCGGCAATAACCGCCACCGTTTTCATGCCATGTTGCTGCGCGTTGCGCT
CATCGGCCCGCTGATTTGCGCCATTAACAGCGCACGCTATCTCCGCACTTTAAGTATTTTGCAATCCAGCGGCGTCCCTC
TGCTGGATGGGATGAATTTGTCCACCGAAAGCCTCAACAACCTCGAAATTCGCCAGCGTCTGGCAAATGCGGCAGAGAAC
GTTCGCCAGGGTAACAGCATTCATCTTTCGCTGGAACAAACCGCAATTTTCCCGCCGATGATGCTCTACATGGTGGCCTC
TGGCGAAAAAAGCGGGCAGCTCGGCACATTAATGGTCAGAGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCG
CCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTC
CAACCTCTTCTTCAACTTAACTCAATGATTAATTAA

Protein sequence : 
MATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLA
DYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFI
VAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAEN
VRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVL
QPLLQLNSMIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 3e-60 47
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 7e-60 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hofF YP_006117119.1 putative general secretion pathway protein F (protein transport protein HofF) VFG2049 Protein 2e-56 46
hofF YP_006117119.1 putative general secretion pathway protein F (protein transport protein HofF) VFG0181 Protein 4e-62 43