Gene Information

Name : ETEC_3157 (ETEC_3157)
Accession : YP_006116702.1
Strain : Escherichia coli ETEC H10407
Genome accession: NC_017633
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3413508 - 3414695 bp
Length : 1188 bp
Strand : +
Note : -

DNA sequence :
ATGTTCCTGCTGGTTCATCCTAATGGTTCCCGTTACTGGCGTCTCCGTTATCGTATTCTGGGTAAGGAGAAAACCCTGGC
ACTTGGTGTGTATCCGGAAGTTTCTCTCTCCGAAGCTCGTACAAAACGGGATGAGGCCCGAAAACTGATTTCGGAGGGGG
TTGACCCTTGCGAACAGAAAAGAGCTAAAAAAGTAGTCCCTGATTTACAACTCTCTTTTGAACATATTGCACGACGCTGG
CATGCCAGTAATAAACAATGGGCACAATCACACAGCGATAAAGTACTCAAAAGCCTCGAGACACACGTTTTCCCCTTTAT
CGGCAACCGGGATATCACAACACTCAGTACCCCGGACCTGCTTATCCCTGTTCGTGCTGCAGAAGCTAAACAAATTTATG
AAATCGCCAGTCGTCTGCAGCAAAGAATATCTGCTGTAATGCGTTATGCCGTACAGTCTGGCATCATCAGATATAACCCG
GCTCTGGATATGGCTGGTGCATTGACCACGGTAAAACGCCAGCATCGCCCTGCTCTGGATCTTTCACGCCTGCCTGAACT
TCTGTCGCGTATTGACGGTTATAAAGGCCAGCCTGTCACCCGACTGGCAGTTATGCTGAATTTACTGGTTTTTATTCGTT
CCAGTGAACTCAGATATGCCCGCTGGTCTGAAATTGATATTGACAATGCCATGTGGACTATTCCAGCCGAACGCGAACCT
CTGCCAGGCGTAAAATTTTCATACCGGGGCTCCAAGATGCGAACACCACATCTTGTGCCACTCAGCCAACAGGCTGTAGC
CATACTGGCAGAACTTCAGACATGGGCAGGTGAAAATGGTCTGATCTTTACGGGAGCACATGACCCACGTAAACCAATCA
GTGAAAACACCGTAAATAAAGCCCTGAGGGTTATGGGGTATGACACAACCCAGGATGTCTGTGGTCATGGATTCCGGGCG
ATGGCATGTAGTGCATTAATAGAATCAGGTTTGTGGTCCCGCGATGCTGTAGAACGCCAGATGAGCCATCAGGAGCGTAA
TGGTGTACGTGCTGCGTATATCCATAAAGCCGAACATCTGGAAGAACGTCGACTTATGCTACAGTGGTGGGCAGATTTTC
TGGATGCGAACAGAGAACAATGTATCAGCCCGTTTGAATATGCAAAGATTAACAATCCATTAAAATAG

Protein sequence :
MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRW
HASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNP
ALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP
LPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRA
MACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKINNPLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 0.0 99
int AAK00456.1 Int Not tested SHI-1 Protein 0.0 98
int CAC81896.1 integrase Not tested LEE II Protein 0.0 98
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 0.0 98
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 0.0 98
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 0.0 98
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 0.0 98
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 0.0 98
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 0.0 98
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 0.0 98
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 0.0 98
int AAK16198.1 Int Not tested PAI-I AL862 Protein 0.0 98
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 0.0 98
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 0.0 98
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 0.0 98
int AAL51028.1 CP4-like integrase Not tested LEE Protein 0.0 98
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 0.0 98
int-phe AAL60261.1 Int-phe Not tested LEE Protein 0.0 98
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 0.0 98
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 0.0 97
int AAL51003.1 CP4-like integrase Not tested LEE Protein 0.0 97
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-135 67
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-119 61
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-119 61
int CAB59975.1 integrase Not tested HPI Protein 9e-72 60
int CAB59974.1 integrase Not tested HPI Protein 3e-102 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 4e-77 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 7e-108 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 7e-108 55
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-110 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-101 55
int2 NP_993013.1 integrase Not tested HPI Protein 4e-101 55
int CAA21384.1 - Not tested HPI Protein 4e-101 55
int CAA08754.1 integrase Not tested HPI Protein 2e-101 55
int YP_002346908.1 integrase Not tested HPI Protein 4e-101 55
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 7e-90 54
unnamed AAD17660.1 unknown Not tested HPI Protein 9e-99 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-97 52
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-70 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETEC_3157 YP_006116702.1 phage integrase VFG0626 Protein 0.0 98
ETEC_3157 YP_006116702.1 phage integrase VFG1693 Protein 0.0 98
ETEC_3157 YP_006116702.1 phage integrase VFG1536 Protein 2e-135 67