|
Name : ETEC_3055 (ETEC_3055) Accession : YP_006116602.1 Strain : Escherichia coli ETEC H10407 Genome accession: NC_017633 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : - COG ID : - EC number : - Position : 3298282 - 3298947 bp Length : 666 bp Strand : - Note : - DNA sequence : ATGTCAAATAGCATTTCGCTGATAGCTATACTATCATTATTTACACTATTGCCGTTTATAATAGCATCCGGGACATATTT TATTAAATTCTCGATTGTTTTTGTTATTGTCCGAAACGCGCTGGGGCTTCAGCAAGTGCCATCAAATATGACACTTAATG GGGTTGCTTTGCTATTGTCAATGTTTGTAATGATGCCGGTTGGGAAGGAAATATATTATAACAGTCAGAATGAGAATCTT TCATTCAATAATGTAGCGTCGGTTGTTAATTTTGTTGAGACAGGCATGAGTGGTTATAAATCATATTTGATAAAATATTC CGAACCGGAGTTGGTTAACTTTTTTGAAAAGATTCAGAAGGTGAATAGCTCTGAAGACAATGAAGTGATATTCGATGATG ATAATATTTCAATTATCTCGTTACTCCCGGCATATGCGTTGAGTGAGATAAAAAGTGCATTTATTATAGGTTTTTATATC TATTTACCCTTTGTTGTAGTGGATCTGGTTATATCCAGCGTTCTGTTAACGTTAGGTATGATGATGATGAGTCCGGTAAC CATATCTACACCGATAAAATTAATTTTGTTTGTCGCGATGGACGGTTGGACAATGTTATCAAAAGGACTCATTTTACAAT ATTTTGACCTATCCATTAATCCCTGA Protein sequence : MSNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQNENL SFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDNEVIFDDDNISIISLLPAYALSEIKSAFIIGFYI YLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLSINP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| epaP | AAZ31293.1 | EpaP | Virulence | ETT2 | Protein | 2e-72 | 98 |
| spaP | NP_311752.1 | surface presentation of antigens protein SpaP | Not tested | LIM | Protein | 2e-72 | 98 |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 1e-50 | 68 |
| spaP | NP_806493.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 1e-50 | 68 |
| spaP | YP_217809.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 6e-51 | 68 |
| spaP | NP_461811.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 6e-51 | 68 |
| ysaR | AAS66846.1 | YsaR | Not tested | SSR-1 | Protein | 7e-45 | 58 |
| spaP | AAS66865.1 | SpaP | Not tested | SSR-2 | Protein | 2e-50 | 58 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 1e-27 | 44 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-27 | 44 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 1e-27 | 44 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-27 | 44 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 8e-27 | 44 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 2e-27 | 44 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 2e-27 | 44 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 2e-27 | 44 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 1e-27 | 44 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-27 | 44 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 1e-27 | 44 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 2e-27 | 44 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 6e-27 | 42 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-22 | 42 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-22 | 42 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-23 | 42 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-23 | 42 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 2e-23 | 42 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-25 | 42 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-25 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG0551 | Protein | 2e-51 | 68 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG2455 | Protein | 7e-48 | 61 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG1773 | Protein | 2e-49 | 61 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG1012 | Protein | 2e-44 | 59 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG0188 | Protein | 3e-29 | 46 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG0394 | Protein | 8e-28 | 45 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG0715 | Protein | 4e-27 | 44 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG0827 | Protein | 8e-28 | 44 |
| ETEC_3055 | YP_006116602.1 | type III secretion system protein | VFG0519 | Protein | 1e-23 | 42 |
