Gene Information

Name : tnpA (ETEC_0238)
Accession : YP_006113827.1
Strain : Escherichia coli ETEC H10407
Genome accession: NC_017633
Putative virulence/resistance : Unknown
Product : putative transposase TnpA protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 269844 - 270245 bp
Length : 402 bp
Strand : +
Note : -

DNA sequence :
GTGGGAACCAAAGTGTCAGATATGCAGAAAAATGTGACTCCCGGCAGGCGAAAAGGCAGCCCTAATTATCCTCCCGAATT
TAAACAGCAGCTCGTTGCTGCCTCCTGTGAACCCGGGATATCCATCTCAAAACTTGCTCTTGAAAATGGCATTAACGCCA
ATCTGTTGTTCAAATGGCGACAACAATGGCGCGAGGGAAAGCTGCTATTACCTTCTTCAGAGAGCCCCCAGCTACTTCCT
GTGACTCTCGATGCAGCTGCCGAACAGCCAGAATCGCTCGCAGAGGACCCGAAAACCCTCAGTATCAGCTGTGAGGTAAC
GTTCCGGCACGGGACGCTCCGCTTCAATGGCAATGTCAGCGAAAAGCTCCTGACTCTGCTGATACAGGAACTGAAGCGAT
GA

Protein sequence :
MGTKVSDMQKNVTPGRRKGSPNYPPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLP
VTLDAAAEQPESLAEDPKTLSISCEVTFRHGTLRFNGNVSEKLLTLLIQELKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z5096 NP_290247.1 prophage-associated protein Not tested LEE Protein 3e-49 99
ECs4545 NP_312572.1 hypothetical protein Not tested LEE Protein 3e-49 99
unnamed AAL99257.1 unknown Not tested LEE Protein 5e-46 99
unnamed ACU09437.1 IS66 family element orf1 Not tested LEE Protein 5e-46 99
unnamed AAC31492.1 L0013 Not tested LEE Protein 2e-49 99
c3577 NP_755452.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-49 99
l0013 CAD33777.1 L0013 protein Not tested PAI I 536 Protein 6e-46 98
unnamed AAL08462.1 unknown Not tested SRL Protein 1e-48 98
c3560 NP_755435.1 hypothetical protein Not tested PAI I CFT073 Protein 6e-24 54
ECUMN_3326 YP_002414006.1 putative transposase Not tested Not named Protein 6e-24 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpA YP_006113827.1 putative transposase TnpA protein VFG0791 Protein 1e-49 99
tnpA YP_006113827.1 putative transposase TnpA protein VFG1708 Protein 1e-49 99
tnpA YP_006113827.1 putative transposase TnpA protein VFG1518 Protein 2e-46 98
tnpA YP_006113827.1 putative transposase TnpA protein VFG1053 Protein 5e-49 98
tnpA YP_006113827.1 putative transposase TnpA protein VFG1697 Protein 2e-24 54