Gene Information

Name : ETEC_2142 (ETEC_2142)
Accession : YP_006115703.1
Strain : Escherichia coli ETEC H10407
Genome accession: NC_017633
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2304018 - 2305409 bp
Length : 1392 bp
Strand : -
Note : -

DNA sequence :
ATGAACTTCGGCAGTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGA
GAGCGATACGCTGACTGGTAGGGTGTATGACCCGGCTGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCC
CTGAATCACTACCCCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTAT
CTGGGCGAGGATACCGCCGAACAGCTGGAGTTGATGCGTAGTGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGC
CTGTACTCAGTGCGATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGC
TGGCCCGCGTGCTGACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTG
GAGCTGAGCCGTTCACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGG
CTATGTCATGACTGACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGA
CCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCCGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGC
CCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTT
CAACGAGCTGTATCGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACG
TCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGA
ATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGCTGTTGAAATCCCTGGAAAGCTGGTTGCGTGA
AAAGATGAAAACCCTGTCGCGACACTCAGAACTGGCGAAAGCGTTCGCATACGCCCTGAACCAGTGGCCGGCGCTGACGT
ACTATGCAGATGATGGCTGGGCTGAGGCGGACAATAACATCGCTGAAAATGCGTTGCGGATGGTCAGTCTGGGCCGCAAA
AACTACCTGTTCTTCGGTTCGGATCATGGAGGAGAGCGGGGAGCGCTGCTGTACAGCCTGATCGGGACGTGCAAACTGAA
CGGAGTGGAGCCAGAAAGCTACCTCCGCTATGTCCTTGACGTCATAGCCGACTGGCCGATAAACCGGGTCGGCGAACTGC
TCCCCTGGCGCGTAGCACTGCCGACTGAATAA

Protein sequence :
MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSY
LGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGV
ELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYS
PDRKGIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRG
MPAEQRLAERQRKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRK
NYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08460.1 unknown Not tested SRL Protein 9e-163 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 97
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 97
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 97
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 97
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 97
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 97
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 97
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 97
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 97
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 97
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 97
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 97
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 8e-168 96
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-151 65
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-150 64
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-150 64
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 1e-104 62
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 9e-136 62
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 8e-97 59
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-122 57
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 9e-110 55
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 8e-110 55
EXB16 ABD94703.1 ISPpu14 transposase Orf3 Not tested ExoU island B Protein 7e-63 43
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 4e-71 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETEC_2142 YP_006115703.1 transposase VFG1051 Protein 5e-163 99
ETEC_2142 YP_006115703.1 transposase VFG0793 Protein 0.0 97
ETEC_2142 YP_006115703.1 transposase VFG1700 Protein 3e-168 96
ETEC_2142 YP_006115703.1 transposase VFG1736 Protein 1e-119 63
ETEC_2142 YP_006115703.1 transposase VFG1513 Protein 7e-105 62