Gene Information

Name : UM146_01545 (UM146_01545)
Accession : YP_006109250.1
Strain : Escherichia coli UM146
Genome accession: NC_017632
Putative virulence/resistance : Virulence
Product : putative type II secretion protein GspC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 325731 - 326690 bp
Length : 960 bp
Strand : +
Note : COG3031 Type II secretory pathway, component PulC

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACTAAAATTCGTCACATTCTTAGCCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATGGTGCGCGGGATGTTCTGGCTCATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCCTCATCGGTGAATAAACCG
CTCCGTGCGGATGCAAAACCGTTCGATAAAAATGACGTGCAATTAGTCAGCCAACAAAACTGGTTTGGCAAATATCAACC
CGTCGCCGCACCGGTAAAACAACCTGAATCTGCGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGTGGGATCGCCT
TTGGTGCCAGACCCGGCGTGGTGATTGAAGAAGGCGGCAAACAGCAGGTCTATTTGCAGGGTGAACGGCTTGGCTCTCAC
AACGCAGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGGAAAATGGAACGTCTGAGTCTGGCAGA
GGAGGAACGCCCCCCTGTGGCGGTGACCAGCAAAAAAGCCGCCAGCGACGAAGCAAAGCAAGCTGTTGCTGAACCTGTCG
TCAGTGCGCCAGTGGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGAATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTCAGGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCACTGCGCTAA

Protein sequence : 
MARVVFRDARIYLIQWLTKIRHILSQRQSLNTDKEHLRKMVRGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSSSVNKP
LRADAKPFDKNDVQLVSQQNWFGKYQPVAAPVKQPESAPVAETRLNVVLRGIAFGARPGVVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKMERLSLAEEERPPVAVTSKKAASDEAKQAVAEPVVSAPVEIPAAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFREGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 5e-113 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UM146_01545 YP_006109250.1 putative type II secretion protein GspC VFG2046 Protein 4e-110 92