Gene Information

Name : UM146_01220 (UM146_01220)
Accession : YP_006109185.1
Strain : Escherichia coli UM146
Genome accession: NC_017632
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 254593 - 255252 bp
Length : 660 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCGGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGCAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 4e-40 44
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 6e-31 44
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 1e-36 43
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 9e-34 42
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 8e-31 41
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 2e-36 41
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 4e-36 41
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 2e-40 47
UM146_01220 YP_006109185.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 2e-32 42