Gene Information

Name : UM146_12365 (UM146_12365)
Accession : YP_006111354.1
Strain : Escherichia coli UM146
Genome accession: NC_017632
Putative virulence/resistance : Virulence
Product : major pilu subunit operon regulatory protein PapB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2543368 - 2543697 bp
Length : 330 bp
Strand : -
Note : -

DNA sequence : 
ATGGCACAGCATGAAGTTATTACCCGGGGAGGGGATGCTTTTTTACTAAAATTACGTGAGAGCGCGCTGTCATCCGGCTC
CATGTCTGAAGAACAATTTTTTTTACTGATAGGTATTTCTTCTATTCACAGTGACAGAGTTATTCTCGCTATGAAGGATT
ATCTGGTCAGTGGTCATTCCCGTAAAGATGTCTGCGAGAAATACCAGATGAATAATGGATATTTCAGTACAACGCTTGGG
CGCCTTACCAGGTTGAATGTCCTCGTTGCCAGACTTGCTCCTTATTATACTGATAGTGTATCAGCTATAGCTGAAACTGC
TTCCCTGTAA

Protein sequence : 
MAQHEVITRGGDAFLLKLRESALSSGSMSEEQFFLLIGISSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLG
RLTRLNVLVARLAPYYTDSVSAIAETASL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaB CAC43422.1 SfaB protein Virulence PAI III 536 Protein 6e-46 99
papB AAZ04473.1 P pilus protein Virulence PAI I APEC-O1 Protein 7e-38 81
APECO1_3518 YP_854257.1 PapB-like protein Virulence PAI I APEC-O1 Protein 1e-37 81
papB YP_002414018.1 pap operon regulatory protein PapB Not tested Not named Protein 1e-37 81
papB AAC61719.1 PapB Virulence PAI I CFT073 Protein 7e-38 81
papB AAL67418.1 PapB Virulence PAI II CFT073 Protein 7e-38 81
prfB CAD42032.1 PrfB protein Virulence PAI II 536 Protein 7e-37 78

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UM146_12365 YP_006111354.1 major pilu subunit operon regulatory protein PapB VFG1641 Protein 2e-46 99
UM146_12365 YP_006111354.1 major pilu subunit operon regulatory protein PapB VFG1551 Protein 3e-37 78
UM146_12365 YP_006111354.1 major pilu subunit operon regulatory protein PapB VFG0436 Protein 7e-22 54
UM146_12365 YP_006111354.1 major pilu subunit operon regulatory protein PapB VFG0942 Protein 2e-15 43