Gene Information

Name : UM146_12345 (UM146_12345)
Accession : YP_006111350.1
Strain : Escherichia coli UM146
Genome accession: NC_017632
Putative virulence/resistance : Virulence
Product : F1C fimbrial usher
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2538402 - 2541032 bp
Length : 2631 bp
Strand : -
Note : COG3188 P pilus assembly protein, porin PapC

DNA sequence :
ATGTTTTCCGGAGATGGCGGACAACTCCTGTCTGATAAATCACTGACCGGCTCTGCTGGCGGGGGTAATAACAGAATGAA
ATTTAATATACTGCCGCTGGCATTTTTTATCGGGATAATTGTTTCTCCGGCCCGGGCTGAGCTCTATTTTAACCCGCGTT
TTCTGTCTGATGACCCGGATGCGGTTGCGGACCTGTCTGCATTTACACAGGGGCAGGAGCTTCCGCCCGGTGTGTACCGG
GTGGATATTTATCTGAATGATACGTATATCTCAACCCGTGACGTGCAGTTTCAGATGAGTCAGGACGGGAAGCAACTTGC
CCCCTGCCTGAGTCCGGAGCATATGAGTGCGATGGGGGTAAACCGTTATGCCGTGCCGGGTATGGAGAGACTGCCGGCTG
ACACCTGCACATCACTGAATTCCATGATTCAGGGTGCCACATTCCGGTTTGATGTCGGGCAGCAGCGATTGTACCTGACC
GTTCCTCAGTTATATATGAGTAATCAGGCCCGTGGTTATATTGCGCCGGAATACTGGGATAACGGAATTACAGCGGCATT
GCTGAATTATGACTTCAGTGGTAATCGGGTGCGCGACAGCTATGGTGGCACCAGCGATTATGCCTATCTGAATCTGAAAA
CAGGACTGAATATCGGGAGCTGGCGTCTTCGGGACAACACCAGCTGGAGTTACAGTGCCGGAAAGGGGTACAGCCAGAAT
AACTGGCAGCACATTAACACCTGGCTGGAGCGGGATATAGTTCCCCTGCGCTCCCGTCTGACGATGGGGGACAGTTATAC
CCGGGGGGATATTTTTGACGGTGTAAATTTCAGGGGTATTCAACTGGCCTCTGATGACAATATGGTTCCGGACAGCCAGA
GAGGGTATGCACCGACAATTCACGGTATTTCCCGGGGAACATCCCGGATTAGTATCCGCCAGAACGGGTATGAAATTTAC
CAGAGTACGCTACCTCCAGGCCCGTTCGAGATAAACGATATTTATCCGGCCGGGAGTGGAGGTGACTTACAGGTAACCCT
GCAGGAAGCTGATGGCAGTGTACAGCGATTTAATGTGCCATGGTCTTCGGTGCCTGTACTGCAACGTGAAGGGCATCTGA
AATATGCTCTCAGTGCCGGAGAGTTTCGCAGTGGCGGACATCAGCAGGATAATCCCCGTTTTGCTGAAGGAACGCTGAAG
TATGGTCTGCCGGCAGGCTGGACGGTGTATGGAGGAGCCTGGATAGCTGAACGCTACCGTGCCTTCAATCTGGGGATGGG
TAAAAACATGGGCTGGCTGGGCGCTGTTTCACTGGATGCCACCCGTGCGAATGCCCGGTTACCGGATGAAAGCCGGCATG
ACGGTCAGTCATATCGTTTTCTGTATAACAAGTCACTGACGGAAACAGGGACAAATATCCAGTTAATCGGATACCGCTAC
TCCACACGGGGCTATTTCAGCTTTGCTGATACCGCCTGGAAGAAAATGAGTGGTTACAGTGTTCTTACCCAGGACGGAGT
GATACAGATACAGCCGAAGTATACGGATTACTACAATCTGGCTTACAACAAGCGGGGAAGGGTGCAGGTGAGTATCAGCC
AGCAGACGGGGGAATCGTCAACGTTGTATCTGAGTGGCAGCCACCAGAGTTACTGGGGAACGGACAGGACGGACCGTCAG
CTTAATGCTGGCTTTAACTCATCTGTGAATGACATCAGCTGGTCCCTGAACTACAGCCTGTCCCGGAATGCATGGCAACA
TGAAACTGACCGGATACTGTCATTTGATGTCAGCATTCCGTTCAGCCACTGGATGCGTTCGGACAGCACATCTGCATGGA
GAAACGCCAGTGCCCGTTACAGTCAGACCCTGGAGGCTCACGGACAGGCTGCCAGTACAGCAGGGCTGTATGGCACATCG
CTGGGGGACAATAATCTGGGATACAGCATCCAGAGTGGTTATACCCGGGGAGGGTATGAGGGGAGCAGTAAAACAGGATA
TGCCTCTCTGAATTACAGAGGGGGATACGGTAATGCCAGTGCAGGATACAGTCACAGTGGGGGTTACCGGCAACTGTATT
ATGGGCTGAGTGGCGGTATTCTGGCACATGCCAATGGTCTGACACTGAGCCAGCCTCTGGGAGATACGCTGATTCTTGTC
CGTGCACCAGGTGCATCTGATACGCGCATTGAAAACCAGACGGGGGTGTCTACAGACTGGAGGGGGTATGCTGTACTGCC
TTATGCAACAGACTATCGTGAAAACCGGGTGGCACTGGATACCAACACCCTTGCAGATAATGTTGATATAGAGAATACCG
TGGTCAGCGTCGTGCCCACGCATGGTGCCGTTGTGCGGGCTGACTATAAAACCCGTGTGGGTGTGAAAGTGCTGATGACG
CTGATGAGAAACGGGAAAGCAGTTCCTTTTGGCTCTGTCGTTACGGCCAGAAATGGGGGGAGCAGTATCGCCGGAGAGAA
TGGTCAGGTTTATCTGAGCGGAATGCCTCTGTCAGGACAGGTTAGTGTGAAATGGGGGAGTCAGACCACGGACCAGTGTA
CTGCAGATTATAAATTACCGAAGGAAAGCGCCGGACAGATATTAAGTCATGTCACGGTTAGTTGCAGGTAA

Protein sequence :
MFSGDGGQLLSDKSLTGSAGGGNNRMKFNILPLAFFIGIIVSPARAELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYR
VDIYLNDTYISTRDVQFQMSQDGKQLAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT
VPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGSWRLRDNTSWSYSAGKGYSQN
NWQHINTWLERDIVPLRSRLTMGDSYTRGDIFDGVNFRGIQLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIY
QSTLPPGPFEINDIYPAGSGGDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK
YGLPAGWTVYGGAWIAERYRAFNLGMGKNMGWLGAVSLDATRANARLPDESRHDGQSYRFLYNKSLTETGTNIQLIGYRY
STRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNLAYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQ
LNAGFNSSVNDISWSLNYSLSRNAWQHETDRILSFDVSIPFSHWMRSDSTSAWRNASARYSQTLEAHGQAASTAGLYGTS
LGDNNLGYSIQSGYTRGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLSGGILAHANGLTLSQPLGDTLILV
RAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRVALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMT
LMRNGKAVPFGSVVTARNGGSSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTVSCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 99
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UM146_12345 YP_006111350.1 F1C fimbrial usher VFG1645 Protein 0.0 99
UM146_12345 YP_006111350.1 F1C fimbrial usher VFG0912 Protein 0.0 99
UM146_12345 YP_006111350.1 F1C fimbrial usher VFG0876 Protein 0.0 65
UM146_12345 YP_006111350.1 F1C fimbrial usher VFG0446 Protein 2e-179 47
UM146_12345 YP_006111350.1 F1C fimbrial usher VFG0454 Protein 8e-171 41