Gene Information

Name : ECABU_c49170 (ECABU_c49170)
Accession : YP_006108826.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5008048 - 5008284 bp
Length : 237 bp
Strand : -
Note : AlpA family

DNA sequence :
ATGTTGACCTCAATGACAGGCCACGACTGCGTGTTGCTGCGTGCCGACGATCCCCTGATCGACATGTACTACATCACCAG
TTTCACCGGTATGACAGATAAATGGTTTTACAAGCTGATCAGTGAAGGCCATTTCCCGAAACCCATCAAGCTGGGCCGCA
GCAGCCGCTGGTACAAAAGTGAAGTGGAGCAGTGGATGCAGCAGCGAATTGAGGAATCACGAGGAGCAGCAGCATGA

Protein sequence :
MLTSMTGHDCVLLRADDPLIDMYYITSFTGMTDKWFYKLISEGHFPKPIKLGRSSRWYKSEVEQWMQQRIEESRGAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 2e-29 94
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-29 94
Z1188 NP_286723.1 hypothetical protein Not tested TAI Protein 1e-22 88
Z1627 NP_287131.1 hypothetical protein Not tested TAI Protein 1e-22 88
S3190 NP_838473.1 hypothetical protein Not tested SHI-1 Protein 5e-17 70
SF2987 NP_708761.1 hypothetical protein Not tested SHI-1 Protein 5e-17 70
ECO103_3577 YP_003223438.1 transcriptional regulator Not tested LEE Protein 3e-17 70
rox AAR97599.1 regulator of excision Not tested SHI-1 Protein 3e-17 70
unnamed CAE85187.1 hypothetical protein Not tested PAI V 536 Protein 2e-17 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c49170 YP_006108826.1 transcriptional regulator VFG1480 Protein 7e-30 94
ECABU_c49170 YP_006108826.1 transcriptional regulator VFG0651 Protein 1e-17 70