Gene Information

Name : ECABU_c48920 (ECABU_c48920)
Accession : YP_006108801.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : putative response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4987340 - 4988059 bp
Length : 720 bp
Strand : +
Note : -

DNA sequence : 
ATGAATAACGTAAAAAAAATACTGCTGATGGAAGATGATTATGATATTGCAGCTCTGTTGCGGCTTAATCTGCAGGATGA
AGGGTATCAGATAGTTCATGAAGCGGATGGCGCCAGAGCTCGTTTATTACTAGACAAGCAGACCTGGGATGCCGTAATAC
TTGATCTTATGCTGCCTAATGTTAATGGGCTGGAGATTTGCCGTTATATCCGTCAGATGACCCGTTATCTGCCTGTGATT
ATCATCAGTGCCCGTACCAGCGAAACCCACCGCGTCCTGGGACTGGAAATGGGGGCTGATGACTATCTACCGAAACCCTT
TTCCATTCCGGAGCTGATTGCCCGCATCAAAGCGTTGTTTCGTCGTCAGGAAGCCATGGGGCAAAATATTCTCCTGGCAG
GTAGACTGATTTGCTGTCACGGTCTGTGCATCAATCCATTTTCACGTGAAGTTCATTTGCATAATAAACAGGTTGATCTT
ACCCCACGCGAGTTTGATCTGCTGCTCTGGTTTGCACGTCATCCTAGCGAAGTTTTTTCCCGTCTTTCACTGCTGGATAA
TGTCTGGGGGTATCAGCATGAAGGATATGAGCATACAGTCAACACGCATATCAACCGTCTTCGTGCCAAAATTGAACAGG
ATGCAGCAGAGCCAAAGATGATCCAGACCGTCTGGGGAAAAGGGTATAGGTTTTCAGTTGACAATGCAGGAATGCGATAA

Protein sequence : 
MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLEICRYIRQMTRYLPVI
IISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEAMGQNILLAGRLICCHGLCINPFSREVHLHNKQVDL
TPREFDLLLWFARHPSEVFSRLSLLDNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVDNAGMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-110 99
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-110 99

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c48920 YP_006108801.1 putative response regulator AE015929.1.gene1106. Protein 5e-27 42
ECABU_c48920 YP_006108801.1 putative response regulator HE999704.1.gene2815. Protein 6e-41 42
ECABU_c48920 YP_006108801.1 putative response regulator NC_007793.3914065.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_002758.1121390.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_010079.5776364.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_002952.2859858.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_007622.3794948.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_003923.1003417.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_013450.8614146.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_002951.3238224.p0 Protein 2e-32 41
ECABU_c48920 YP_006108801.1 putative response regulator HE999704.1.gene1528. Protein 2e-31 41
ECABU_c48920 YP_006108801.1 putative response regulator NC_012469.1.7685629. Protein 9e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c48920 YP_006108801.1 putative response regulator VFG1563 Protein 2e-110 99
ECABU_c48920 YP_006108801.1 putative response regulator VFG1702 Protein 1e-110 99