Gene Information

Name : papF (ECABU_c48470)
Accession : YP_006108757.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : minor pilin subunit PapF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4946032 - 4946565 bp
Length : 534 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTTCTGTGCCGCTCTCCGGAGGGGGGATGATTCGTTTATCATTATTTATATCGTTGCTTCTGACATCGGTCGCTGT
ACTGGCTGATGTGCAGATTAACATCAGGGGAAATATCTATATTCCTCCATGCACCATTAATAACGGGCAGAATATTGTTG
TCGATTTTGGGAATATTAATCCTGAGCACGTGGACAACTCACGTGGTGAGGTAACAAAAACCATAAGCATATCCTGTCCG
TATAAGAGTGGCTCTCTCTGGATAAAAGTTACGGGAAATACTATGGGAGGAGGTCAGAATAATGTACTGGCAACAAATAT
AACTCATTTTGGTATAGCGCTGTATCAGGGAAAAGGAATGTCAACACCTCTTACATTAGGTAATGGTTCAGGAAATGGTT
ACAGAGTGACAGCAGGTCTGGACACAGCGCGTTCAACGTTCACCTTTACTTCAGTGCCCTTTCGTAATGGCAGCGGGATA
CTGAATGGCGGGGATTTCCGGACCACGGCCAGTATGAGCATGATTTATAACTGA

Protein sequence : 
MFSVPLSGGGMIRLSLFISLLLTSVAVLADVQINIRGNIYIPPCTINNGQNIVVDFGNINPEHVDNSRGEVTKTISISCP
YKSGSLWIKVTGNTMGGGQNNVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSGI
LNGGDFRTTASMSMIYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfF CAD42024.1 PrfF protein Virulence PAI II 536 Protein 2e-73 99
papF NP_755459.1 PapF protein Virulence PAI I CFT073 Protein 6e-72 94
papF_2 NP_757028.1 PapF protein Virulence PAI II CFT073 Protein 6e-72 94
papF YP_854249.1 P pilus minor tip component PapF Virulence PAI I APEC-O1 Protein 3e-72 94
papF AAZ04419.1 P pilus minor tip component Virulence PAI I APEC-O1 Protein 2e-72 94
papF YP_002414010.1 Fimbrial adapter PapF Not tested Not named Protein 8e-72 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papF YP_006108757.1 minor pilin subunit PapF VFG1543 Protein 8e-74 99
papF YP_006108757.1 minor pilin subunit PapF VFG0900 Protein 2e-72 94
papF YP_006108757.1 minor pilin subunit PapF VFG0889 Protein 2e-72 94