Gene Information

Name : ECABU_c03450 (ECABU_c03450)
Accession : YP_006104480.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Unknown
Product : DNA integration/recombination/invertion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 361604 - 362818 bp
Length : 1215 bp
Strand : +
Note : -

DNA sequence :
GTGAAACTCAATGCCCGTCAAATAGACACAGCCAAGCCAAAAGAGAAGGCTTACAAGCTGGCCGATGGTGGCGGTTTGTA
TCTCTTGGTAAAACCTAATGGAGGTAAATACTGGCGACTTAAATATCGTGTAGCTGGTAAAGAGAAGCTATTGGCACTAG
GTGTGTATCCTGAGGTTACTCTAGCCGATGCTCGGGCAAAACGTGAAGATGCGAAAAGAGGTATCGCTGGTGGTATCGAT
CCGATGGAAGCGAAACGAGAGGAAAAGATTGCCCGGGAAACGCAGTTAAACAACACCTTCAAAGATATTGCCCTTGAGTG
GCACAGCAGCAAATTAAAAAAATGGTCTGCTGGTTATGCTTCAGACATCCTCGAAGCCTTCAACAAAGATGTGTTCCCTT
ACATTGGCAAAAAACCAATCGCCGAAATCAAACCACTTGAACTTCTGAATGTGCTGCGGCGCATCGAGGGGCGCGGTGCG
ACAGAAAAAGCCAAAAAAGTGAGGCAGCGGTGCGGGGAAGTTTTCCGCTATGCAATAGTCACTGGTCGCGCAGAGTATAA
CCCTGCACCAGACCTTACTAGCGCGATGCAAGGCCATGAATCTAATCATTACCCTTTCCTTACGACCAAAGAATTACCTG
ATTTTTTCAAGGCATTGTCCAGTTACTCAGGAAGCGCATTGGTTGTTATGGCGGCTCGTCTACTGATTATCACCGGCTTG
CGAACTGGCGAACTACGTGGCGCATTATGGGATGAAATTGATTTCAACAAGGCTATATGGGAGATACCCGCTTCACGTAT
GAAAATGCGGCGGCCTCATATTGTGCCATTGTCTGAGCAGGCTCTTTCGCTTATTGGGAAGATTAGAGAAATAACAGGCA
ATTACCCTCTTATGTTTCCCGGGCGCAATGATCCAAGGAAAACAATGAGTGAGGCCAGCATAAACCAAGTGTTTAAGCGC
ATTGGCTACGCTGGACGTGTAACTGGTCATGGGTTCCGACACACTATGAGCACGATTTTGCATGAGCAGGGCTATAACAC
CGCGTGGATAGAAACGCAGCTCGCTCACGTTGATAAGAACTCAATTCGTGGCACATACAACCATGCGCAATATCTGGATG
GACGGCGGGAGATGCTTCAATGGTATGCCGACTATATGGATTCTCTCGAGCATGGCGGAAATGTGGTGCATATGGTGTTT
GAAAAACACGCATGA

Protein sequence :
MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVTLADARAKREDAKRGIAGGID
PMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGA
TEKAKKVRQRCGEVFRYAIVTGRAEYNPAPDLTSAMQGHESNHYPFLTTKELPDFFKALSSYSGSALVVMAARLLIITGL
RTGELRGALWDEIDFNKAIWEIPASRMKMRRPHIVPLSEQALSLIGKIREITGNYPLMFPGRNDPRKTMSEASINQVFKR
IGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYMDSLEHGGNVVHMVF
EKHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-138 72
int CAC39282.1 integrase Not tested LPA Protein 6e-127 65
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-127 65
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-125 65
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-125 65
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-125 65
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-126 64
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-126 64
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-126 64
int ACU09430.1 integrase Not tested LEE Protein 2e-126 64
int AAD44730.1 Int Not tested SHI-2 Protein 5e-125 64
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-122 62
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-71 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-71 43
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-71 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-74 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-74 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-74 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-74 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-74 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-73 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-73 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-73 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 9e-74 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-73 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 9e-74 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-74 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-74 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-74 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-74 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-74 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 9e-73 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-74 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c03450 YP_006104480.1 DNA integration/recombination/invertion protein VFG0598 Protein 2e-125 65
ECABU_c03450 YP_006104480.1 DNA integration/recombination/invertion protein VFG0783 Protein 1e-126 64
ECABU_c03450 YP_006104480.1 DNA integration/recombination/invertion protein VFG0626 Protein 8e-74 41
ECABU_c03450 YP_006104480.1 DNA integration/recombination/invertion protein VFG1693 Protein 1e-74 41