Gene Information

Name : kpsD (ECABU_c33450)
Accession : YP_006107341.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : polysialic acid capsule transport protein KpsD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3405146 - 3406822 bp
Length : 1677 bp
Strand : +
Note : -

DNA sequence :
ATGAAATTATTTAAATCAATTTTACTGATTGCCGCCTGTCACGCGGCGCAGGCCAGCGCGACCATTGATATTAACGCTGA
CCCAAACCTGACAGGAGCCGCGCCGCTTACCGGTATTCTGAACGGACAGAAGTCGGATACGCAAAACATGAGCGGCTTCG
ACAATACCCCGCCGCCCGCACCGCCGGTGGTAATGAGCCGTATGTTTGGTGCTCAACTTTTCAACGGCACCAGCGCGGAT
AGCGGTGCGACGGTAGGATTCAACCCTGACTATATTCTGAATCCGGGTGATAGCATTCAGGTTCGCTTGTGGGGTGCGTT
CACCTTTGATGGTGCGTTACAGGTTGATCCCAAAGGTAATATTTTCCTGCCGAACGTTGGTCCGGTGAAAGTTGCTGGCG
TCAGTAATAGTCAGCTAAATGCCTTGGTCACATCCAAAGTGAAGGAAGTATACCAGTCCAACGTCAACGTCTACGCCTCC
TTATTACAGGCGCAGCCAGTAAAAGTGTACGTGACCGGATTTGTGCGTAATCCTGGTCTGTATGGCGGTGTGACGTCTGA
TTCGTTACTCAATTATCTGATCAAGGCTGGCGGCGTTGATCCAGAGCGCGGAAGTTACGTTGATATTGTGGTCAAGCGCG
GTAACCGCGTGCGCTCCAACGTCAACCTGTACGACTTCCTGCTGAACGGCAAACTGGGACTTTCGCAGTTCGCCGATGGT
GACACCATCATCGTCGGGCCACGTCAGCATACTTTCAGCGTTCAGGGCGATGTCTTTAACAGCTACGACTTTGAGTTCCG
CGAAAGCAGCATTCCCGTAACGGAAGCGTTGAGCTGGGCGCGCCCTAAGCCTGGCGCGACTCACATTACGATTATGCGTA
AACAGGGGCTGCAAAAACGCAGCGAATACTATCCGATCAGTTCTGCGCCAGGCCGTATGTTGCAAAATGGCGATACCTTA
ATCGTGAGCACTGACCGCTATGCCGGCACCATTCAGGTGCGGGTTGAAGGCGCACACTCCGGTGAACATGCCATGGTATT
GCCTTATGGTTCCACTATGCGTGCGGTTCTGGAAAAAGTCCGCCCGAACAGCATGTCGCAGATGAACGCAGTTCAGCTTT
ATCGCCCATCAGTGGCTCAGCGTCAGAAAGAGATGCTGAATCTCTCGCTGCAAAAGCTGGAGGAAGCCTCACTTTCTGCC
CAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAAGCACAACTGATCAGCCGCTTTGTGGCGAAAGCACGCAC
CGTGGTTCCGAAAGGTGAAGTGATCCTCAACGAATCCAATATTGATTCTGTTCTGCTTGAAGATGGCGACGTCATCAATA
TTCCGGAGAAAACATCGCTGGTTATGGTTCATGGCGAGGTGCTGTTCCCGAACGCGGTGAGCTGGCAGAAAGGGATGACC
ACCGAGGATTACATCGAGAAATGCGGTGGCCTGACGCAAAAATCGGGTAACGCCAGAATTATCGTCATTCGTCAGAACGG
TGCGGCAGTCAACGCTGAAGATGTAGATTCACTCAAGCCTGGCGATGAGATTATGGTTCTGCCGAAATATGAATCGAAAA
ACATTGAAGTTACCCGTGGTATTTCCACCATCCTCTATCAGCTGGCGGTGGGTGCAAAAGTGATTCTGTCTTTGTAA

Protein sequence :
MKLFKSILLIAACHAAQASATIDINADPNLTGAAPLTGILNGQKSDTQNMSGFDNTPPPAPPVVMSRMFGAQLFNGTSAD
SGATVGFNPDYILNPGDSIQVRLWGAFTFDGALQVDPKGNIFLPNVGPVKVAGVSNSQLNALVTSKVKEVYQSNVNVYAS
LLQAQPVKVYVTGFVRNPGLYGGVTSDSLLNYLIKAGGVDPERGSYVDIVVKRGNRVRSNVNLYDFLLNGKLGLSQFADG
DTIIVGPRQHTFSVQGDVFNSYDFEFRESSIPVTEALSWARPKPGATHITIMRKQGLQKRSEYYPISSAPGRMLQNGDTL
IVSTDRYAGTIQVRVEGAHSGEHAMVLPYGSTMRAVLEKVRPNSMSQMNAVQLYRPSVAQRQKEMLNLSLQKLEEASLSA
QSSTKEEASLRMQEAQLISRFVAKARTVVPKGEVILNESNIDSVLLEDGDVINIPEKTSLVMVHGEVLFPNAVSWQKGMT
TEDYIEKCGGLTQKSGNARIIVIRQNGAAVNAEDVDSLKPGDEIMVLPKYESKNIEVTRGISTILYQLAVGAKVILSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsD CAE85212.1 KpsD protein Virulence PAI V 536 Protein 0.0 99
kpsD AAZ04468.1 polysialic acid transport protein precursor Virulence PAI I APEC-O1 Protein 0.0 99
kpsD YP_854331.1 polysialic acid transport protein KpsD precursor Not tested PAI I APEC-O1 Protein 0.0 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsD YP_006107341.1 polysialic acid capsule transport protein KpsD VFG1448 Protein 0.0 99