Gene Information

Name : ECABU_c33140 (ECABU_c33140)
Accession : YP_006107313.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Unknown
Product : putative transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3379816 - 3381354 bp
Length : 1539 bp
Strand : +
Note : -

DNA sequence :
ATGAACGACATCTCTTCTGACGACATTTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAACTCCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGAGAGCGATACGCTG
ACTGGTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCCCTGAATCACTACC
CCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTATCTGGGCGAGGATA
TCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCT
GACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGCCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCAGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTGCTGACT
GACGGTAAGCTCCATGCTGATGACACGCCTGTCCCGGTGCTGTTGCCAGGCAATAAGAAAACGAAGACCGGGCGGTTATG
GACCTGCGTTCGTGACGACCGTAACGCCGGGTCAACGCTGGCGCCGGCGGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACCCATCTTGCGGGGTTCAGTGGTGTACTGCAGGCGGATGCATACGCCGGGTTCAACGAGCTGTAC
CGGGATGGCCGGATAACGGAAGCCGCCTGTTGGGCTCACGCCCGCCGTAAAATCCACGATGTGCACGTTCGCACCCCGTC
AGCCCTGACGGAGGAAGCGCTGAAACGGATCGGCGAACTGTACGCCATCGAGGCAGAGATAAGGGGAATGACGGCGGAGC
AGCGCCTTGCCGAACGTCAGTTGAAAACGAAACCGCTGCTGAAATCCCTGGAAAGCTGGCTGCGTGAAAAGATGAAAACC
CTGTCGCGACACTCAGAACTGGCGAAAGCGTTCGCATACGCCCTGAACCAGTGGCCGGCGCTGACGTACTATGCAGATGA
TGGCTGGGCTGAGGCGGACAATAACATCGCTGAAAATGCGTTGCGGATGGTCAGTCTGGGCCGCAAAAACTACCTGTTCT
TCGGTTCGGATCATGGAGGAGAGCGGGGAGCGCTGCTGTACAGCCTGATCGGGACGTGCAAACTGAACGGAGTGGAGCCA
GAAAGCTACCTCCGCTATGTCCTTGACGTCATAGCCGACTGGCCGATAAACCGGGTCGGCGAACTGCTCCCCTGGCGCGT
AGCACTGCCGACTGAATAA

Protein sequence :
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTL
TGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDIAEQLELMRSAFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT
DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELY
RDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKT
LSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEP
ESYLRYVLDVIADWPINRVGELLPWRVALPTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-174 99
unnamed AAL08460.1 unknown Not tested SRL Protein 3e-176 95
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 94
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 94
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 94
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 94
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 94
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 94
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 94
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 94
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 94
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 93
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 93
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 93
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-150 65
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 2e-106 64
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 7e-154 64
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 7e-154 64
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 1e-142 61
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 4e-99 58
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 1e-132 56
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 9e-119 55
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 8e-119 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c33140 YP_006107313.1 putative transposase VFG1700 Protein 1e-174 99
ECABU_c33140 YP_006107313.1 putative transposase VFG1051 Protein 1e-176 95
ECABU_c33140 YP_006107313.1 putative transposase VFG0793 Protein 0.0 94
ECABU_c33140 YP_006107313.1 putative transposase VFG1513 Protein 1e-106 64
ECABU_c33140 YP_006107313.1 putative transposase VFG1736 Protein 7e-123 63