Gene Information

Name : alpA (ECABU_c02700)
Accession : YP_006104407.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : prophage regulatory protein AlpA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 276000 - 276206 bp
Length : 207 bp
Strand : -
Note : -

DNA sequence : 
ATGACCACCCCAGTTTCGCTGATGGATGACCAGATGGTCGATATGACGTTTATCACTCAGCTGACCGGCCTGACCGATAA
GTGGTTTTACAAGCTCATCAAGGATGGGGCCTTTCCGGCACCCATCAAACTCGGCCGCAGCTCCCGCTGGCTGAAAAGTG
AAGTGGAAGCCTGGCTGCAGGCGCGTATTGCACAGTCCCGTCCGTAA

Protein sequence : 
MTTPVSLMDDQMVDMTFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVEAWLQARIAQSRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85187.1 hypothetical protein Not tested PAI V 536 Protein 7e-27 99
rox AAR97599.1 regulator of excision Not tested SHI-1 Protein 3e-26 95
S3190 NP_838473.1 hypothetical protein Not tested SHI-1 Protein 4e-26 95
SF2987 NP_708761.1 hypothetical protein Not tested SHI-1 Protein 4e-26 95
unnamed ADD91712.1 putative transcriptional regulator AlpA Not tested PAI-I AL862 Protein 5e-26 95
unnamed CAI43835.1 hypothetical protein Not tested LEE Protein 5e-26 95
ECO103_3577 YP_003223438.1 transcriptional regulator Not tested LEE Protein 8e-26 93
unnamed AAL08466.1 unknown Not tested SRL Protein 4e-26 93
Z1188 NP_286723.1 hypothetical protein Not tested TAI Protein 1e-14 70
Z1627 NP_287131.1 hypothetical protein Not tested TAI Protein 1e-14 70
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 8e-18 70
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 6e-18 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
alpA YP_006104407.1 prophage regulatory protein AlpA VFG0651 Protein 1e-26 95
alpA YP_006104407.1 prophage regulatory protein AlpA VFG1057 Protein 1e-26 93
alpA YP_006104407.1 prophage regulatory protein AlpA VFG1480 Protein 2e-18 70