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Name : yfcU (ECABU_c26700) Accession : YP_006106705.1 Strain : Escherichia coli ABU 83972 Genome accession: NC_017631 Putative virulence/resistance : Virulence Product : outer membrane usher protein YfcU precursor Function : - COG functional category : - COG ID : - EC number : - Position : 2705188 - 2707842 bp Length : 2655 bp Strand : - Note : - DNA sequence : ATGTGTATGCCTAATCACTCAAATTTTCGGCTGCGGGGAATCGCCTGCTATATTGCGCTGGCAATCTCTGGTGGGTCAGT CAATGCATGGGCTGATGATTCAATTCAATTTGACCCCCGTTTCCTTGAGTTAAAGGGCGATACGAAAATTGATCTCGGTA AGTTTTCAAAAAAAGGGTATGTCGACGCGGGTAAATATAATTTACGTGTATTTATAAATAAACAACCCCTTTCTGATGAA TACGACATTAACTGGTACGTCTCTGAAAACGATCCAACAAAAAACTATGCCTGCTTGACACCTGAGTTAGTGGCGGCGCT GGGGCTGAAAGAAGGGATAGCAAAAAGCCTGCAGTGGACGCACAACGATGAATGCCTTAAACCAGGTCAATTAGACGGGA TGGAAGTCGAGAATGATTTAAGCCAGTCGGCGTTGCTGCTGACAGTGCCACAGGCTTACCTCGAATATACCAGCAGCGAC TGGGACCCTCCCTCACGCTGGGACGACGGTATTCCTGGCCTGATTGCCGACTACAGCCTCAATGCGCAAACTCGCCATCA GGAGCAGGGGGGCGAGGACTCACATGATATCAGCGGCAACGGTACCGTTGGGGCGAACCTGGGGGCATGGCGTTTCCGTG CAGACTGGCAAAGTGATTATCAGCACACCCGCAGCAACGATGACGACGATGACAGCAGTAACAGTACAACGAGCAAAAAC TGGGACTGGAGCCGTTATTACGCCTGGCGGGCCTTACCCTCTTTAAAAGCGAAGCTGTCGCTGGGGGAAGATTATCTCAA TTCCGATATTTTCGACGGCTTTAACTATATCGGCAGCAGCGTCAGCACCGATGACCAGATGCTGCCGCCCAACCTGCGCG GCTATGCACCGGATGTTTCCGGCGTGGCGCACAGCAGTGCAAAAGTCACCATTAGCCAGATGGGCCGGGTACTTTACGAA ACCCAGGTTCCCGCCGGGCCATTCCGCATTCAGGATATCGGCGACTCCGTCTCCGGCACACTGCACGTCCGCGTTGAAGA ACAGAATGGTCAGGTGCAGGAATATGACGTTACGACCGCATCTATGCCATTCCTCACGCGCCAGGGGCAGGTGCGTTACA AAGTGATGATGGGGCGTCCGGAAGACTGGAACCACAAGACCGAAGGCGGCTTTTTCTCCGGCGGAGAAGCGTCATGGGGG GTGGCAGATGGCTGGTCGCTCTACGGTGGTGCGCTGGCAGATAAACACTATCAGTCGGCGGCGATGGGGGTGGGGCGCGA CCTCGCACAGTTTGGCGCGCTGGCGTTCGATGTGACTCACTCGCACGTCAACCTGGATCATGACAGCGCATACGGCAAAG GAAAACTGGACGGCAACTCCTTTCGCGTGAGCTATGCCAAAGACTTTGACGAACTCAACAGCCGCGTCACCTTTGCAGGC TACCGTTTCTCCGAAAAGAACTTCATGACCATGAGCGAGTATCTGGACGCGAACCAGTCGGACATGGCGCGGACCGGTAA CGACAAAGAGATGTATACGATCACCTATAACCAGAACTTTGCCGCTGCGGGTGTTTCGATCTATCTCAACTACTCCCATC GTACTTACTGGGATCGCCCGGAACAGACAAACTATAACCTGATGTTTTCCCACTATTTTAATATGGGGAGCATTCGCAAC ATGAGCATCTCGGTGACCGGCTATCGCTACGAATATGACGATAATGCGGATAAGGGGATGTACCTCAGTATGAGCATTCC GTGGAGCGACAGCAGCACCGTGACCTACAACGGTTCCTACGGCAGCGGGTCGGACAGCAGCCAGGTCGGTTACTTTAAGC GCGTCGATGACGCAACGCACTACCAGGTTAACGTTGGCACCAGCGAGCAGCACGGCAGCGCGGATGGTTATCTGAGCCAC GACGGTTCGCTGGCGAAGGTTGATCTCAGCGCCAACTACCATGAAGGGGAATACCGTTCGGCGGGGATCGCCTTACAGGG CGGGGCAACGCTGACCGCGCATGGTGGGGCGCTGCACCGTACCCAGAACATGGGCGGCACGCGCCTGCTGATTGACGCCG ACGGGATTGCCAACGTGCCGGTCGAAAGCAACGGCGCGCCGGTGTACACCAATATGTTTGGCAAGGCGGTGGTCGCCGAT ATTAACAACTACTATCGCAATCAGGCGTATATCGATTTAAACAACTTGCCGGAAGATGCGGAAGCCACCCAGTCGGTGGT GCAGGCGACTCTGACGGAAGGCGCAATCGGCTATCGTAAATTCAAAGTGATCAGCGGGCAAAAAGCGATGGCGGTACTGC GGTTGCGTGACGGTAGCTACCCGCCGTTTGGCGCGGAAGTGAAAAACGACGAGCAGCAGCAGGTTGGCATTGTGGATGAT GAAGGCAATGTCTATCTGGCGGGGGTCAATGCGGACGAGCATATGATGGTGTTCTGGGAAGGCAGCGCACAATGCGAGAT CGTATTGCCGAAGCCGCTACCTGCCGATTTGTTCAGCGGTCTGTTGTTGCCGTGTGAACAAAAGGGAACGGCAGCCCCTG ATTCTTCAGCGCCAGAAATTAAGCCTGTTATTCAGGACCAGACGCGGCAAGTCACACCAACGGAAGCGCCGACGTCAATT TCAGCAACTCAATAA Protein sequence : MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKQPLSDE YDINWYVSENDPTKNYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDDDDSSNSTTSKN WDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLYE TQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASWG VADGWSLYGGALADKHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFAG YRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIRN MSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSADGYLSH DGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQNMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVAD INNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVDD EGNVYLAGVNADEHMMVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQDQTRQVTPTEAPTSI SATQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 4e-144 | 43 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-137 | 42 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 5e-136 | 42 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-136 | 42 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 5e-137 | 42 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-137 | 42 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 4e-137 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_006106705.1 | outer membrane usher protein YfcU precursor | VFG1548 | Protein | 1e-137 | 42 |
| yfcU | YP_006106705.1 | outer membrane usher protein YfcU precursor | VFG0884 | Protein | 2e-137 | 42 |
| yfcU | YP_006106705.1 | outer membrane usher protein YfcU precursor | VFG0895 | Protein | 2e-137 | 42 |
