Gene Information

Name : ECABU_c12460 (ECABU_c12460)
Accession : YP_006105341.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1263538 - 1264365 bp
Length : 828 bp
Strand : +
Note : -

DNA sequence :
ATGTCTGCAATCACAGTCTCCCGTCCGGAAGTGGTCAACGGGCATACGGACGTTATCTGCTCAACCAGTATCCGCCACAT
TCTGGCTGTACGAAAGAGTACACTGCTGCAAATCGACACACTTATCCGGCAACTGGCTGAAATCTCATCAATGACAGAAA
GTATTGGCGGTAAAACCGCACTGGACTGGGCCATGAAACAGGATTTTCGCTGTGGTTGCTGGCTGACTGAGAAACCGGAA
ACCGCAATGAAAGCCATTACCCGCAACCTTGACCGTGAAATCTGGCGTGACCTGATGCAACGCTCCGGGATGCTGTCATT
AATGGATGCGCAGACCCGTGATACATGGTACCGATCACTGGAGTACGATAATTTTCCGGAAATCAGTGAAGAGAATATTC
TGAGTACGTTTGAGCAGCTACACCAGAATAAGGATGAAGTGTTTGAGCGAGGAGTGATCAACCTCTTCAGAGGGTTGAGC
TGGAATTACAAAACCAATTGCCCCTGTAAATTTGGCAATAAAATTATCGTCAACAATCTGGTGAGGTGGGACCGGTGGGG
ATTGCATCTTATCACCGGGCAACAGGCAGATAGACTTGCCGACCTGGAAAGAATGCTGCATCTGTTCAGCGGCAAACCGA
TCCCCGACAACAGGGAAAACATAACTATTCATCTGGACGATCACATCCGGTCTCTTCAGGGAAAAGAATGCTATGAAGAT
GAGATGTTCATTATTAAATACTTTAAGAAGGGCTCTGCGCACATCACGTTCAGGAAGCCAGAACTGGTTGACAGACTGAA
TGATATTATCGCAAGAACACTATCCTGA

Protein sequence :
MSAITVSRPEVVNGHTDVICSTSIRHILAVRKSTLLQIDTLIRQLAEISSMTESIGGKTALDWAMKQDFRCGCWLTEKPE
TAMKAITRNLDREIWRDLMQRSGMLSLMDAQTRDTWYRSLEYDNFPEISEENILSTFEQLHQNKDEVFERGVINLFRGLS
WNYKTNCPCKFGNKIIVNNLVRWDRWGLHLITGQQADRLADLERMLHLFSGKPIPDNRENITIHLDDHIRSLQGKECYED
EMFIIKYFKKGSAHITFRKPELVDRLNDIIARTLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1226 NP_286760.1 hypothetical protein Not tested TAI Protein 4e-119 92
Z1664 NP_287166.1 hypothetical protein Not tested TAI Protein 4e-119 92
ECO103_3595 YP_003223452.1 hypothetical protein Not tested LEE Protein 6e-118 92
unnamed AAL57572.1 unknown Not tested LEE Protein 3e-118 92
z1226 CAD33792.1 Z1226 protein Not tested PAI I 536 Protein 3e-119 92
unnamed CAI43906.1 hypothetical protein Not tested LEE Protein 5e-117 92
unnamed CAE85207.1 hypothetical protein Not tested PAI V 536 Protein 1e-118 91
S3207 NP_838489.1 hypothetical protein Not tested SHI-1 Protein 4e-117 91
SF3002 NP_708776.1 hypothetical protein Not tested SHI-1 Protein 4e-117 91
unnamed AAK00485.1 unknown Not tested SHI-1 Protein 3e-117 91
ECO111_3781 YP_003236116.1 hypothetical protein Not tested LEE Protein 5e-118 91
aec79 AAW51762.1 Aec79 Not tested AGI-3 Protein 3e-117 89
APECO1_3484 YP_854327.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-117 88
ORF_49 AAZ04463.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-117 88
unnamed CAD66210.1 hypothetical protein Not tested PAI III 536 Protein 5e-106 87

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c12460 YP_006105341.1 hypothetical protein VFG1533 Protein 2e-119 92
ECABU_c12460 YP_006105341.1 hypothetical protein VFG0666 Protein 2e-117 91
ECABU_c12460 YP_006105341.1 hypothetical protein VFG1685 Protein 3e-106 87