Gene Information

Name : ECABU_c12440 (ECABU_c12440)
Accession : YP_006105339.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1262748 - 1263236 bp
Length : 489 bp
Strand : +
Note : -

DNA sequence :
ATGAACCTTTCCCTGACGCCGGAGGCCGACGGCATTAACGTACAGGCGATGAACATGGGGCGCATTGTCGTTGACGTCGA
TGGTGTTAATTTTGCTGAACTGATTAACGTGGCCTGCGGCAATGGCTACTCCCTTCGTGTTGTTGATGAATCTGACCGGA
CCGCAACTGACAGCATGCCACCCTCCGCTGCCCTGAGCGGTATACGCTGCAGCACCTCACATATCACGGAAACAGACAAC
GCTTGGCTGTACTCGCTGTCGCATCAGACGAATGACACCGGCGAATCAGAATGGATTCATTTTACAGGCAGCGGATATCT
GTTACGTACCGATGCGTGGTCATACCCGGTTCTGCGGCTTAAACGCCTGGGCCTGTCAAGAACGTTCCGTCGTCTGGTCG
TCACTCTCACCCGGCGTTATGGCGTCAGTCTCATTCATCTGGACGCCGGCGCAGAATGTCTGCCGGGTTTACCCACTTTC
GACTGGTAA

Protein sequence :
MNLSLTPEADGINVQAMNMGRIVVDVDGVNFAELINVACGNGYSLRVVDESDRTATDSMPPSAALSGIRCSTSHITETDN
AWLYSLSHQTNDTGESEWIHFTGSGYLLRTDAWSYPVLRLKRLGLSRTFRRLVVTLTRRYGVSLIHLDAGAECLPGLPTF
DW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42102.1 hypothetical protein Not tested PAI II 536 Protein 8e-57 86
unnamed AAL57574.1 unknown Not tested LEE Protein 1e-48 86
unnamed CAD66208.1 hypothetical protein Not tested PAI III 536 Protein 4e-57 86
unnamed AAK00483.1 unknown Not tested SHI-1 Protein 2e-47 86
unnamed CAI43904.1 hypothetical protein Not tested LEE Protein 1e-55 85
c5148 NP_756996.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-52 84
yeeW NP_838488.1 hypothetical protein Not tested SHI-1 Protein 1e-52 84
yeeW NP_708774.1 hypothetical protein Not tested SHI-1 Protein 1e-52 84
Z5092 NP_290243.1 hypothetical protein Not tested LEE Protein 2e-55 84
ECs4540 NP_312567.1 hypothetical protein Not tested LEE Protein 2e-55 84
unnamed AAC31487.1 L0008 Not tested LEE Protein 1e-55 84
unnamed ACU09434.1 conserved hypothetical protein Not tested LEE Protein 1e-55 84
yeeW ADD91698.1 YeeW Not tested PAI-I AL862 Protein 3e-53 83
Z1223 NP_286758.1 hypothetical protein Not tested TAI Protein 2e-55 83
Z1662 NP_287164.1 hypothetical protein Not tested TAI Protein 2e-55 83
z5092 CAD33790.1 Z5092 protein Not tested PAI I 536 Protein 9e-54 83
unnamed AAL08479.1 unknown Not tested SRL Protein 2e-54 83
yeeW CAI43849.1 YeeW protein Not tested LEE Protein 2e-52 82
APECO1_3485 YP_854326.1 hypothetical protein Not tested PAI I APEC-O1 Protein 7e-52 82
aec77 AAW51760.1 Aec77 Not tested AGI-3 Protein 5e-52 82
yeeW AAZ04462.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-52 82
yeeW CAE85205.1 YeeW protein Not tested PAI V 536 Protein 1e-52 81
ECO103_3593 YP_003223450.1 hypothetical protein Not tested LEE Protein 9e-51 81

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c12440 YP_006105339.1 hypothetical protein VFG1621 Protein 3e-57 86
ECABU_c12440 YP_006105339.1 hypothetical protein VFG1683 Protein 2e-57 86
ECABU_c12440 YP_006105339.1 hypothetical protein VFG0664 Protein 3e-53 84
ECABU_c12440 YP_006105339.1 hypothetical protein VFG0787 Protein 5e-56 84
ECABU_c12440 YP_006105339.1 hypothetical protein VFG1070 Protein 8e-55 83
ECABU_c12440 YP_006105339.1 hypothetical protein VFG1531 Protein 4e-54 83