Gene Information

Name : ECABU_c12290 (ECABU_c12290)
Accession : YP_006105326.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1251003 - 1251875 bp
Length : 873 bp
Strand : +
Note : -

DNA sequence :
ATGAATCCGTCTGATGCCATTGAGGCAATTGAAAAACCGCTCTCCTCCCTGCCTTATTCACTTTCCCGTCACATCCTGGA
ACATCTGCGCAAACTCACCAGCCACGAACCCGTGATTGGCATTATGGGGAAAAGCGGGGCCGGTAAATCCTCACTCTGTA
ATGCACTGTTTCAGGGGGAGGTCACCCCGGTCAGTGATGTTCACGCTGGCACCCGGGAAGTGCGGCGCTTCCGTCTGAGT
GGCCACGGTCACAGCATGGTTATCACTGACCTGCCCGGGGTGGGCGAGAGCCGGGACAGGGATGCAGAGTATGAAGCCCT
GTACCGTGACATTCTGCCAGAACTGGACCTGGTACTGTGGCTGATTAAAGCCGATGACCGTGCCCTGTCTGTGGATGAGT
ATTTCTGGCGACACATCCTGCACCGGGGACATCAGCGGGTACTGTTTGTGGTGACGCAGGCCGATAAAACGGAGCCCTGC
CATGAATGGGATATGGCCGGTATTAAGCCTTCTCCCGCACAGGCACAGAATATTCGCGAAAAAACGGAGGCGCTATTCCG
TCTGTTCCGGCCCGTACATCCGGTTGTTGCCGTATCGGCCCGCACCGGCTGGGAGCTGGATACGCTGGTCAGTGCGCTCA
TGACAGCGCTTCCCGACCATGCCGCCAGTCCCCTGATGACCCGCCTGCAGGACGGGCTGCGCACGGAGTCTGTCCGCTCT
CAGGCCCGTGAACAGTTTACCGGTGCGGTGGACCGGATATTTGACACAGCGGAGAGCGTCTGTGTTGCCTCTGTTGTCCG
TACGGCCCTGCGCGCTGTTCGTGACACCGTGGTCTCTGTTGCCCGCGCGGTATGGAACTGGATTTTCTTCTGA

Protein sequence :
MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVRRFRLS
GHGHSMVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQRVLFVVTQADKTEPC
HEWDMAGIKPSPAQAQNIREKTEALFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDGLRTESVRS
QAREQFTGAVDRIFDTAESVCVASVVRTALRAVRDTVVSVARAVWNWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08471.1 unknown Not tested SRL Protein 2e-132 98
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 3e-131 98
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 3e-132 98
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 3e-132 98
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 1e-130 97
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 3e-132 97
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 7e-131 97
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 7e-131 97
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 5e-132 97
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-130 96
Z1210 NP_286745.1 histone Not tested TAI Protein 8e-130 96
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 8e-130 96
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 5e-130 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECABU_c12290 YP_006105326.1 hypothetical protein VFG1062 Protein 1e-132 98
ECABU_c12290 YP_006105326.1 hypothetical protein VFG1674 Protein 4e-131 97
ECABU_c12290 YP_006105326.1 hypothetical protein VFG0654 Protein 4e-131 97