Gene Information

Name : sfaB (ECABU_c11240)
Accession : YP_006105223.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : F1C and S fimbrial switch regulatory protein SfaB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1162333 - 1162662 bp
Length : 330 bp
Strand : +
Note : -

DNA sequence :

ATGGCACAGCATGAAGTTATTACCCGGGGAGGGGATGCTTTTTTACTAAAATTACGTGAGAGCGCGCTGTCATCCGGCTC
CATGTCTGAAGAACAATTTTTTTTACTGATAGGTATTTCCTCTATTCACAGTGACAGAGTTATTCTCGCTATGAAGGATT
ATCTGGTCAGTGGTCATTCCCGTAAAGATGTCTGCGAGAAATACCAGATGAATAATGGATATTTCAGTACAACGCTTGGG
CGCCTTACCAGGTTGAATGTCCTCGTTGCCAGACTTGCTCCTTATTATACTGATAGTGTATCAGCTATAGCTGAAGCTGC
TTCCCTGTAA

Protein sequence :

MAQHEVITRGGDAFLLKLRESALSSGSMSEEQFFLLIGISSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLG
RLTRLNVLVARLAPYYTDSVSAIAEAASL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
sfaB	CAC43422.1	SfaB protein	Virulence	PAI III 536	Protein	5e-46	100
papB	AAZ04473.1	P pilus protein	Virulence	PAI I APEC-O1	Protein	7e-38	81
APECO1_3518	YP_854257.1	PapB-like protein	Virulence	PAI I APEC-O1	Protein	1e-37	81
papB	YP_002414018.1	pap operon regulatory protein PapB	Not tested	Not named	Protein	1e-37	81
papB	AAC61719.1	PapB	Virulence	PAI I CFT073	Protein	7e-38	81
papB	AAL67418.1	PapB	Virulence	PAI II CFT073	Protein	7e-38	81
prfB	CAD42032.1	PrfB protein	Virulence	PAI II 536	Protein	7e-37	78

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
sfaB	YP_006105223.1	F1C and S fimbrial switch regulatory protein SfaB	VFG1641	Protein	2e-46	100
sfaB	YP_006105223.1	F1C and S fimbrial switch regulatory protein SfaB	VFG1551	Protein	3e-37	78
sfaB	YP_006105223.1	F1C and S fimbrial switch regulatory protein SfaB	VFG0436	Protein	7e-22	54
sfaB	YP_006105223.1	F1C and S fimbrial switch regulatory protein SfaB	VFG0942	Protein	2e-15	43