Gene Information

Name : sfaC (ECABU_c11230)
Accession : YP_006105222.1
Strain : Escherichia coli ABU 83972
Genome accession: NC_017631
Putative virulence/resistance : Virulence
Product : putative F1C and S fimbrial switch regulatory protein SfaC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1161693 - 1161914 bp
Length : 222 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGAATGAAATAATGGGTTTTCTGAGCAGACATAATGGAGGGAAAACCGCAGAAATTGCGGAGGCGCTGGCGGTAAC
GGATTACCAGGCACGCTATTACCTGTTATTACTGGAAAAAGAAGGTATGGTTCAGCGCTCTCCGTTAAGACGAGGCATGG
CAACATACTGGTTTCTGAAAGGAGAGATGCAGGCGGGACAGAGCTGTTCTTCCACAACTTAA

Protein sequence : 
MQNEIMGFLSRHNGGKTAEIAEALAVTDYQARYYLLLLEKEGMVQRSPLRRGMATYWFLKGEMQAGQSCSSTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaC CAC16949.1 SfaC protein Virulence PAI III 536 Protein 6e-29 99
prfI CAD42033.1 PrfI protein Virulence PAI II 536 Protein 7e-28 94
papI_2 NP_757037.1 PapI protein Virulence PAI II CFT073 Protein 3e-27 92
papI AAL67419.1 PapI Virulence PAI II CFT073 Protein 2e-27 92
fooI AAT48694.1 fimbrial regulatory protein Virulence PAI I 4787 Protein 2e-27 92
papI NP_755468.1 PapI protein Virulence PAI I CFT073 Protein 4e-27 91
papI YP_002414019.1 pap operon regulatory protein PapI Not tested Not named Protein 4e-27 91
afaF AAK16195.1 AfaF Virulence PAI-I AL862 Protein 8e-10 49
afaF ADD91749.1 putative transcriptional regulator AfaF-VIII Not tested PAI-I AL862 Protein 8e-10 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sfaC YP_006105222.1 putative F1C and S fimbrial switch regulatory protein SfaC VFG1640 Protein 3e-29 99
sfaC YP_006105222.1 putative F1C and S fimbrial switch regulatory protein SfaC VFG1552 Protein 3e-28 94
sfaC YP_006105222.1 putative F1C and S fimbrial switch regulatory protein SfaC VFG0891 Protein 8e-28 92
sfaC YP_006105222.1 putative F1C and S fimbrial switch regulatory protein SfaC VFG0880 Protein 1e-27 91