Gene Information

Name : kdsB (ECOK1_0985)
Accession : YP_006100202.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.38
Position : 1018463 - 1019209 bp
Length : 747 bp
Strand : +
Note : identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466

DNA sequence :
ATGAGTTTTGTGGTCATTATTCCCGCGCGTTACGCGTCCACGCGTCTGCCCGGTAAACCATTGGTTGATATTAACGGCAA
ACCCATGATTGTTCATGTTCTTGAACGCGCGCGCGAATCAGGTGCCGAGCGCATCATCGTGGCAACCGATCATGAGGATG
TTGCCCGCGCTGTTGAAGCCGCTGGCGGCGAAGTATGTATGACGCGCGCCGATCATCAGTCAGGTACAGAACGATTGGCG
GAAGTTGTCGAAAAATGCGCATTCAGCGACGACACTGTGATCGTTAATGTGCAGGGTGATGAACCGATGATCCCTGCGAC
AATCATTCGTCAGGTTGCTGATAACCTCGCTCAGCGTCAGGTGGGTATGGCGACTCTGGCGGTGCCAATCCACAATGCGG
AAGAAGCGTTTAACCCGAATGCGGTGAAAGTGGTTCTCGACGCTGAAGGGTACGCACTGTACTTCTCTCGCGCCACCATT
CCGTGGGATCGTGATCGTTTTGCAAAAGACCTTGAAACCGTAGGCGATAACTTCCTGCGTCATCTTGGTATTTATGGCTA
CCGAGCAGGCTTTATCCGTCGTTATGTTACCTGGCAGCCAAGTCCGTTAGAACATATCGAAATGTTAGAGCAGCTTCGTG
TTCTGTGGTACGGCGAAAAAATCCACGTTGCTGTCGCCCAGGAAGTTCCTGGCACAGGTGTGGATACCCCTGAAGATCTC
AAGCGCGTTCGCGCCGAAATGCGCTAA

Protein sequence :
MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLA
EVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
PWDRDRFAKDLETVGDNFLRHLGIYGYRAGFIRRYVTWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDL
KRVRAEMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 6e-34 44
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 1e-33 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 4e-34 44