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Name : kdsB (ECOK1_0985) Accession : YP_006100202.1 Strain : Escherichia coli IHE3034 Genome accession: NC_017628 Putative virulence/resistance : Virulence Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase Function : - COG functional category : - COG ID : - EC number : 2.7.7.38 Position : 1018463 - 1019209 bp Length : 747 bp Strand : + Note : identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466 DNA sequence : ATGAGTTTTGTGGTCATTATTCCCGCGCGTTACGCGTCCACGCGTCTGCCCGGTAAACCATTGGTTGATATTAACGGCAA ACCCATGATTGTTCATGTTCTTGAACGCGCGCGCGAATCAGGTGCCGAGCGCATCATCGTGGCAACCGATCATGAGGATG TTGCCCGCGCTGTTGAAGCCGCTGGCGGCGAAGTATGTATGACGCGCGCCGATCATCAGTCAGGTACAGAACGATTGGCG GAAGTTGTCGAAAAATGCGCATTCAGCGACGACACTGTGATCGTTAATGTGCAGGGTGATGAACCGATGATCCCTGCGAC AATCATTCGTCAGGTTGCTGATAACCTCGCTCAGCGTCAGGTGGGTATGGCGACTCTGGCGGTGCCAATCCACAATGCGG AAGAAGCGTTTAACCCGAATGCGGTGAAAGTGGTTCTCGACGCTGAAGGGTACGCACTGTACTTCTCTCGCGCCACCATT CCGTGGGATCGTGATCGTTTTGCAAAAGACCTTGAAACCGTAGGCGATAACTTCCTGCGTCATCTTGGTATTTATGGCTA CCGAGCAGGCTTTATCCGTCGTTATGTTACCTGGCAGCCAAGTCCGTTAGAACATATCGAAATGTTAGAGCAGCTTCGTG TTCTGTGGTACGGCGAAAAAATCCACGTTGCTGTCGCCCAGGAAGTTCCTGGCACAGGTGTGGATACCCCTGAAGATCTC AAGCGCGTTCGCGCCGAAATGCGCTAA Protein sequence : MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLA EVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI PWDRDRFAKDLETVGDNFLRHLGIYGYRAGFIRRYVTWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDL KRVRAEMR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 1e-33 | 44 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 4e-34 | 44 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 6e-34 | 44 |
