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Name : gspF (ECOK1_3379) Accession : YP_006102494.1 Strain : Escherichia coli IHE3034 Genome accession: NC_017628 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : - COG ID : - EC number : - Position : 3464002 - 3465225 bp Length : 1224 bp Strand : - Note : identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCACTGTTTTACTATCAGGCGCTGGAGCGTAATGGTCGCAAAACCAAAGGCATGATTGAGGCGGATTCCGCGCGTCA TGCCCGTCAATTGTTACGCGGTAAAGACCTCATTCCCGTGCACATTGAAGCCCGGATGAATGCATCGGCAGGGGGATTGT TGCAGCGTCGGCGGCACGCACATCGTCGCGTGGCGACGGCAGATCTGGCGCTGTTCACTCGTCAACTGGCAACGCTGGTG CAGGCAGCAATGCCGCTGGAAACCTGCTTACAGGCGGTCAGTGAGCAAAGCGAAAAACTGCATGTAAAAAGCCTCGGAAT GGCGCTGCGCAGCCGGATTCAGGAAGGTTATACCCTGTCGGACAGCCTGCGCGAACATCCCCGCGTCTTTGACTCCCTGT TTTGTTCGATGGTCGCTGCCGGAGAAAAATCCGGACATCTCGACGTGGTGCTCAATCGCCTGGCGGATTACACCGAACAG CGGCAGCGTCTGAAATCACGCCTGCTGCAGGCCATGCTCTATCCGCTGGTTCTGCTGGTGGTGGCAACGGGCGTAGTCAC TATTTTGCTGACGGCAGTGGTGCCGAAAATTATCGAACAGTTTGATCATCTCGGACACGCGCTACCCGCCTCCACCCGAA TGCTCATCGCTATGAGCGACGCGTTACAGGCCAGCGGCGTGTACTGGCTGGCGGGTTTGCTGGGGCTTCTGGTGCTGGGG CAACGGTTACTCAAAAATCCTGCGATGCGCCTGCGCTGGGATAAAACCTTGCTGCGCCTGCCCGTGACGGGGCGTGTTGC GCGCGGACTGAATACGGCGCGTTTTTCCCGCACGTTAAGCATCCTCACCGCCAGCAGTGTTCCGCTGTTGGAAGGCATTC AGACCGCCGCCGCCGTGTCGGCAAATCGTTATGTCGAGCAACAACTGCTGCTGGCGGCAGATCGCGTCCGCGAAGGAAGC AGCCTGCGCGCCGCGCTGGCGGATCTGCGCCTGTTTCCACCGATGATGCTGTACATGATCGCCTCCGGCGAACAGAGCGG CGAGCTGGAAACCATGCTTGAACAGGCCGCGGTCAACCAGGAACGGGAATTTGATACACAGGTGGGGCTGGCGTTAGGGC TGTTTGAGCCGGCGCTGGTGGTGATGATGGCGGGTGTGGTGCTGTTTATCGTCATCGCCATCCTCGAACCGATGCTGCAA CTGAACAATATGGTTGGAATGTAA Protein sequence : MALFYYQALERNGRKTKGMIEADSARHARQLLRGKDLIPVHIEARMNASAGGLLQRRRHAHRRVATADLALFTRQLATLV QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ RQRLKSRLLQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRMLIAMSDALQASGVYWLAGLLGLLVLG QRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS SLRAALADLRLFPPMMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQ LNNMVGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 2e-158 | 100 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-156 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_006102494.1 | general secretion pathway protein F | VFG2049 | Protein | 4e-150 | 97 |
| gspF | YP_006102494.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-70 | 47 |
