Gene Information

Name : kpsT (ECOK1_3370)
Accession : YP_006102485.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Virulence
Product : polysialic acid ABC transporter, ATP-binding protein KpsT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3456816 - 3457475 bp
Length : 660 bp
Strand : -
Note : identified by similarity to SP:P23888; match to protein family HMM PF00005

DNA sequence : 
ATGATTAAGATTGAGAATTTGACGAAGTCTTATCGCACGCCCACTGGGCGGCATTATGTTTTTAAAAATTTGAATATTAT
TTTTCCTAAAGGCTATAACATTGCCCTGATTGGTCAAAATGGAGCCGGTAAATCAACTTTACTTCGGATAATTGGTGGTA
TAGATCGTCCTGATAGTGGGAACATTATTACAGAACATAAAATTTCATGGCCCGTTGGATTGGCTGGTGGATTTCAAGGA
AGTTTAACCGGTCGTGAAAATGTTAAATTTGTTGCCCGACTATATGCAAAACGCGATGAGTTAAATGAGAGGGTTGATTT
TGTTGAAGAGTTTTCCGAACTCGGAAAATATTTCGATATGCCCATTAAAACTTATTCTTCTGGCATGAGGTCAAGGTTAG
CTTTTGGATTAAGTATGGCTTTTAAATTCGACTATTATCTTATTGATGAAATCACTGCTGTTGGAGACGCAAAGTTTAAA
AAGAAATGTTCAGATATATTCGATAAAATAAGAGAAAAATCTCATTTAATAATGGTGTCACATAGTGAACGAGCTTTAAA
GGAGTATTGTGATGTTGCTATTTATCTTAACAAAGAGGGGCAAGGTAAATTTTATAAAAATGTTACGGAAGCCATTGCTG
ATTACAAAAAAGACCTATAG

Protein sequence : 
MIKIENLTKSYRTPTGRHYVFKNLNIIFPKGYNIALIGQNGAGKSTLLRIIGGIDRPDSGNIITEHKISWPVGLAGGFQG
SLTGRENVKFVARLYAKRDELNERVDFVEEFSELGKYFDMPIKTYSSGMRSRLAFGLSMAFKFDYYLIDEITAVGDAKFK
KKCSDIFDKIREKSHLIMVSHSERALKEYCDVAIYLNKEGQGKFYKNVTEAIADYKKDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 4e-100 100
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-75 72
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 9e-44 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsT YP_006102485.1 polysialic acid ABC transporter, ATP-binding protein KpsT VFG1449 Protein 1e-100 100
kpsT YP_006102485.1 polysialic acid ABC transporter, ATP-binding protein KpsT VFG0696 Protein 1e-45 48
kpsT YP_006102485.1 polysialic acid ABC transporter, ATP-binding protein KpsT VFG0258 Protein 3e-44 48
kpsT YP_006102485.1 polysialic acid ABC transporter, ATP-binding protein KpsT VFG2563 Protein 3e-42 43